Pairwise Alignments

Query, 640 a.a., DEAD/DEAH family ATP-dependent RNA helicase from Rahnella sp. WP5

Subject, 563 a.a., Probable cold-shock DeaD-box protein A homolog DeaD (ATP-dependent RNA helicase dead homolog) from Mycobacterium tuberculosis H37Rv

 Score =  481 bits (1238), Expect = e-140
 Identities = 262/550 (47%), Positives = 357/550 (64%), Gaps = 30/550 (5%)

Query: 8   SFADLGLSAPIISALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLH 67
           +FADL +   ++ A+ D+GYE P+ IQA  IP L++G DV+G+AQTG+GKTAAF++P+L 
Sbjct: 14  TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73

Query: 68  NIDASLKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRALRQGP 127
            ID + K PQ LVL PTRELA+QVAEA   +  ++  +NV+ +YGG  Y VQL  LR+G 
Sbjct: 74  KIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGA 133

Query: 128 QVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALF 187
           QVVVGTPGR++DHL+R TL+LS +  LVLDEADEML MGF +DVE I+++ P   Q ALF
Sbjct: 134 QVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALF 193

Query: 188 SATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWSVYGLRKNEALVRFLEAEDFD 247
           SATMP AIR+++ +++ DP EV  ++      +ISQSY  V   RK +AL R LE E F+
Sbjct: 194 SATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQV--ARKMDALTRVLEVEPFE 251

Query: 248 AAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 307
           A I+FVRTK AT E+AE L   G+S+AA++GD+ QA RE+T+  L+DG +DIL+ATDVAA
Sbjct: 252 AMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAA 311

Query: 308 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 367
           RGLDVERIS V+NYDIP D+ESYVHRIGRTGRAGR+G AL+FV  RE  LL+ IE+  + 
Sbjct: 312 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQ 371

Query: 368 TIPEVEIPTAEVLGERRLAKFAAKVQQQLESSDLDQYRALLAKLQPAEELDVETLAAALL 427
           T+ E ++PT E +  +R+AKFA  +   L    ++ +R L+ + +   ++ +  +AAAL 
Sbjct: 372 TLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADIAAALA 431

Query: 428 KMAQGERPLIVAADPVFKSRPPRREFEERGDRGDRGDRRDRPVRSNDRPARDGDSPRRER 487
              +G    ++A DP    R             +R  RRDRP R   RP           
Sbjct: 432 VQCRGGEAFLMAPDPPLSRR-------------NRDQRRDRPQRPKRRP----------- 467

Query: 488 RDAGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGE 547
               ++  YR+ VG+   +    IVGAIANEG +     G I++    S +ELP  +P  
Sbjct: 468 ----DLTTYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRA 523

Query: 548 ILSHFTRTRI 557
            L    +TRI
Sbjct: 524 TLKKLAQTRI 533