Pairwise Alignments

Query, 390 a.a., ABC transporter permease from Rahnella sp. WP5

Subject, 366 a.a., ABC-2 type transporter (RefSeq) from Shewanella loihica PV-4

 Score = 64.7 bits (156), Expect = 4e-15
 Identities = 82/386 (21%), Positives = 150/386 (38%), Gaps = 44/386 (11%)

Query: 14  AAWRCFSRAFTRETRHAFRKPVIHWLCWIFPL---LLFGLISSNFSEGTLLDLPVSVVDN 70
           A+ R      T+E R   R  +   +  + PL   LLFG   +      + ++PV VVD 
Sbjct: 4   ASLRRIKSITTKEIRQLKRDRITFGMVVMIPLIQLLLFGYAINT----DVRNVPVVVVDQ 59

Query: 71  DHSPLSKTLIRKLDAGSHAHVQAFEGGLPEAEYRLRTAQDYALLYIPNDFEADVLAGKQP 130
            HS   + ++  +       ++       EAE  +   +  A L +P +    +  G+  
Sbjct: 60  SHSAAGRWIVEAVKVTQVVSIEKHYASAEEAEAAITRGEVRAALILPPNLTEKLANGETL 119

Query: 131 SAVLYYNALFYGAGLYSTQDFSGLITELNTRYRSIIATEMGKTLPSLASVDVSYGSLFNA 190
                                  ++   +T   S I+      L  +   D      F  
Sbjct: 120 G--------------------QWVVDGSDTMVASAISQLRNMPLDQITGQDTQRLPTFEV 159

Query: 191 SGSYIYYQQFAATIH---LLQLFTVTCMIYVMA---------RSQALLSAPSFTLAL-LG 237
           +  Y   Q+ A  I    +  + T+T +++  A           + L++ P   L L LG
Sbjct: 160 ALFYNPEQRSAVNIVPGLIAVILTMTMILFTSAAIVRERERGNLELLITTPIKPLELMLG 219

Query: 238 KLAPYTLCFTTLLMAEIAMLVGFFDARVSGNPLYMLLIGFFYVIAAQSLGLLLFTFTKTT 297
           K+ PY L     +   + +    FD  ++G    +L+    ++ A+ +LGL++ T  KT 
Sbjct: 220 KIVPYILVGLVQMTIILGLGHLIFDVPINGAIAQLLMGTLLFIAASLTLGLIISTIAKTQ 279

Query: 298 ITAYTMMGIFVSIALTFSGMAVPVLSMPLPARIISGIEPLSYALAAMFDVFLREVSVRGI 357
           + A  M    +   +  SG   P  +MP PA+ I+ + P ++ +  +  + LR  ++  +
Sbjct: 280 LQAMQMTIFIILPTILLSGFMFPFEAMPKPAQWIAELLPATHFMRIIRAIVLRGGALSDM 339

Query: 358 ----LMVCCILLVYPLLTSLLVRKRL 379
               L +    LV  L+ SL   KRL
Sbjct: 340 QFDALWLIGFTLVGILVASLRFNKRL 365