Pairwise Alignments

Query, 390 a.a., ABC transporter permease from Rahnella sp. WP5

Subject, 435 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 85.5 bits (210), Expect = 3e-21
 Identities = 89/338 (26%), Positives = 146/338 (43%), Gaps = 16/338 (4%)

Query: 25  RETRHAFRKPVIHWLCWIFPLLLFGLISSNFSEGTLLDLPVSVVDNDHSPLSKTLIRKLD 84
           RE R  +R P    L    PLL    +   FS G    LPV++VD DHS LS+ L R+L 
Sbjct: 41  RELRALWRDPWQLALISYIPLLGILCLWWLFSAGLPRQLPVAIVDLDHSQLSRMLTRQLK 100

Query: 85  AGSHAHVQAFEGGLPEAEYRLRTAQDYALLYIPNDFEADVLAGKQPSAVLYYNALFYGAG 144
           A      Q+F   L  A   ++ AQ YA++  P D + D+L G  P+  + YN+ F   G
Sbjct: 101 ANPVTDPQSFT-DLSSAITAMQQAQVYAVVVFPYDMKKDLLTGHTPTIDVRYNSQFLLVG 159

Query: 145 -LYSTQDFSGL---ITELNTRYRSIIATEMGKTLPSLASVDVSYGSLFNASGSYIYYQQF 200
            L S+Q    L   + ++    + +  T   +   +L+ V     +LFN + +YI +   
Sbjct: 160 KLLSSQIQMSLGDGLLQVAGLKQLMTGTPKSQVAVNLSPVKSQTTALFNRNNNYIGFLVP 219

Query: 201 AATIHLLQLFTVTCMIYVMARSQALLSAPS-------FTLALLGKLAPYTLCFTTLLMAE 253
              + L QL ++  +   + R   L +A S        T     K+    L FT +LM +
Sbjct: 220 PVLVALWQLLSMLVIANSLNRELHLNAAQSVGGISNRLTEHFWPKVLAKILLFTPILMLQ 279

Query: 254 ----IAMLVGFFDARVSGNPLYMLLIGFFYVIAAQSLGLLLFTFTKTTITAYTMMGIFVS 309
               +  L  +    ++G+   +L      ++A  SL LL+F   + +    +      +
Sbjct: 280 GGFILTWLYQYLALPLAGSLALLLFAQLIMLLAVWSLVLLVFVLMRDSARVISFCTALFA 339

Query: 310 IALTFSGMAVPVLSMPLPARIISGIEPLSYALAAMFDV 347
            A  F G+  P   MP  A+    + P S+ + +   V
Sbjct: 340 PAFAFMGITFPTHEMPQLAQWWRLVMPSSHYIESHVSV 377