Pairwise Alignments

Query, 672 a.a., cyclic di-GMP phosphodiesterase from Rahnella sp. WP5

Subject, 950 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  319 bits (817), Expect = 4e-91
 Identities = 196/552 (35%), Positives = 309/552 (55%), Gaps = 29/552 (5%)

Query: 112 AEQVVSEANSVIVIIDQEGKIHRFNRLSEEYTGLREEDVIGRSAYDL---------FMSM 162
           A  V   A+  +VI+D   ++   N      +G   E+++GRS   +         + +M
Sbjct: 404 AATVFEAASEGMVIMDATYRVLAVNDACCALSGYEREELLGRSIARIAGTPESQRQYEAM 463

Query: 163 EEGLASRQNING-FFQHQQSYEV-ERWINTVKGQRLFLFRNKFVHSGSGKQQKYLICSGS 220
            + L    +  G   + ++S EV  +W+   + +             S     +++   S
Sbjct: 464 RDALERHGHWQGELIEKRKSGEVYPQWVQLREVR------------DSDDSVTHVVAFIS 511

Query: 221 DITDERKAQERLRVLANTDLVTGFANRNALQESLARAL--IERGENNVGLIYLDLDNFKK 278
           D++  RK +ERLR L + D +TG ANR   +E L  A   + R   N+ ++Y+DLD FK 
Sbjct: 512 DLSVRRKIEERLRYLTHYDDLTGLANRGLFKERLHEACQRVRRNGRNMAVLYIDLDRFKL 571

Query: 279 VNDAYGHMFGDHLLRAVSDAIQDCLSPNDKLARLGGDEFIIL-STHAEIKALEALSQRVL 337
           +N++ GH   D LLR VS  +   L+  D +ARL GDEF++L   +  + +L  L  R+L
Sbjct: 572 LNESLGHEAADALLREVSRRLSTTLAEADTIARLSGDEFVVLLDAYGSLSSLAHLGSRLL 631

Query: 338 RRLSLPFRIGLIEVYTGCSAGIAICPEHGTDGDILLQNADTAMYAAKEKGKNVHCVFSPE 397
           +R+  P  I   E+    S G+++ P++  D + LL+ A+ AM  AK  G N    F+  
Sbjct: 632 QRIRKPMVIDEQELVISASIGVSLLPDNSRDAEALLRQANIAMQQAKHLGGNTLQFFTDR 691

Query: 398 MNEKASEYMWLDTHLRKALSEKDQLVLHYQPKVSLYG-TVQSVEALLRWNSPERGLIQPQ 456
               +  Y+ L+  LRKAL E  QL + YQP++SL   ++++ EAL+RW  PE GL+ P 
Sbjct: 692 PQASSMHYLQLENQLRKAL-EVGQLEVFYQPRLSLADDSLEAAEALVRWRHPELGLVAPA 750

Query: 457 SFIPYAEESGLITPVGKWVIETATRQATEWQKKGLN-LRVAVNLSGRQLNNSAFITTLSD 515
            FIP AEE+GLI P+G++V+  A RQA +WQ+ GL  +RV+VNLS +QL    F++ +  
Sbjct: 751 QFIPLAEETGLIIPLGEFVLREACRQARQWQQDGLAAIRVSVNLSVKQLRQGNFVSLVRQ 810

Query: 516 AMKNAGMKGCLLDFELTESCLVEDEGAAITMINQLHKLGAQVHLDDFGTGYSSLSQLARI 575
            ++  G+   +L+ ELTES L++D   AI++  QL  LG ++ +DDFGTG+SSLS L R 
Sbjct: 811 VLEETGLPATMLELELTESQLLDDIDNAISISEQLRALGVKLAIDDFGTGFSSLSYLKRF 870

Query: 576 PLDCIKLDQSFIRGINDNPVSQALVRAIVAVAKTLQLTVVAEGVETAEEEKLIDEIGVDS 635
           P+D +K+D+SFI  +  +    A+ RAI+A+  +L+  VVAEGVET  +   +     D 
Sbjct: 871 PVDYVKIDRSFISELEHSSQDAAITRAIIAMVHSLERKVVAEGVETQAQMDFLKANHCDE 930

Query: 636 KQGFLYAKPMPA 647
            QG+L + P+PA
Sbjct: 931 IQGYLLSPPVPA 942