Pairwise Alignments

Query, 354 a.a., recombinase RecA from Rahnella sp. WP5

Subject, 357 a.a., recA protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  593 bits (1529), Expect = e-174
 Identities = 305/349 (87%), Positives = 325/349 (93%), Gaps = 3/349 (0%)

Query: 1   MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMG 60
           M +D NK+KALAA L QIEKQFGKGSIM+LGEDRSMDVETISTGSLSLD+ALGAGGLPMG
Sbjct: 1   MKVDPNKEKALAAVLSQIEKQFGKGSIMKLGEDRSMDVETISTGSLSLDVALGAGGLPMG 60

Query: 61  RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQP 120
           RIVEIYGPESSGKTTLTL+VIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQP
Sbjct: 61  RIVEIYGPESSGKTTLTLEVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQP 120

Query: 121 DTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 180
           DTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA
Sbjct: 121 DTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 180

Query: 181 GNLKNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDVVVG 240
           GNLK +NTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRR GAIKEGD VVG
Sbjct: 181 GNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVG 240

Query: 241 SETRVKVVKNKIAAPFKQAEFQILYGEGININGELIDLGVKHKLIEKAGAWYSYNGEKIG 300
           +ETRVKVVKNK+AAPFKQAEFQILYG+GIN  GEL+DLGV HKLIEKAGAWYSY G+KIG
Sbjct: 241 NETRVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIG 300

Query: 301 QGKANSCNYLKENPKVAAELDKKLRDMLLSGTGELSVATTAEDADDNME 349
           QG+AN+  YL ENP +AAE+DK LR++LLS    L  A++A D DDN+E
Sbjct: 301 QGRANAGKYLTENPAIAAEIDKTLRELLLSNPSAL--ASSASD-DDNVE 346