Pairwise Alignments

Query, 647 a.a., exoribonuclease II from Rahnella sp. WP5

Subject, 821 a.a., ribonuclease R from Vibrio cholerae E7946 ATCC 55056

 Score =  187 bits (475), Expect = 2e-51
 Identities = 179/691 (25%), Positives = 308/691 (44%), Gaps = 78/691 (11%)

Query: 1   MFQDNPLLAQLKQ--QLHSQTPRVEGIVKGTEKGFGFLEVDG----QKSYFIPPPYMKKV 54
           M +D  L+   +Q   L  +   V+G V G + G G++  +G    +    +P   M+ +
Sbjct: 66  MERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSLNKEGDILLPHHQMRTL 125

Query: 55  MHGDRVIA--SLQTEKEREVVQPETLVEPFLSRFVGRVTKKDDRLSIIPDHPLLRDAIQC 112
           +HGD V+   S   ++ R+  +   ++E    + VGR   +     ++PD   +   I  
Sbjct: 126 IHGDFVLVQPSGTDKRGRKEGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIHHDIL- 184

Query: 113 RVARNINHEVSDGDWCVAEMRRHPLKEGDHSFQAEITEWITTGADDLAPWWVT---LARH 169
            +  ++      G+  V E+     +  +     ++ E +    +++AP   T   +  H
Sbjct: 185 -IPNDLRAGARMGNVVVIEITDRGTR--NRGMMGKVVEVL---GENMAPGMETQIAIRTH 238

Query: 170 NLEREAPKSDIAELRDEGLTRE----------DLTALPFVTIDSGSTQDMDDALYVKDNG 219
            +  E P     E +  GLT E          DL ALP VTID    +D DDA+Y +   
Sbjct: 239 QIPHEWPAE--VEQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKK 296

Query: 220 DGTLQMTVAIADPTAYVSEGSELDNIAKKRAFTNYLPGFNIPMLPRELSDDICSLWPDVS 279
            G  ++ VAIAD + YV   + LD  A  R  + Y P   +PMLP  LS+ +CSL P V 
Sbjct: 297 GGGWRLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVD 356

Query: 280 RPVLACSVTVGADGSLGSDIRFFAATIESKAKLAYDDVSDWLEADEKSEWQPASEVIASQ 339
           R  + C +TV   G L S  + + A + S A+L Y  V + LE DE  E +   + +   
Sbjct: 357 RLCMVCEMTVSETGKL-SGYKHYEAVMNSHARLTYTKVHEILEGDE--ELRERYKALVPH 413

Query: 340 IRLLKRVCDVRSAWRTEHALVFKDRPDYRFVLGEKGNVLEIIAEHRRIANRIVEESMIAA 399
           +  L ++  V  + R E   +  +  + +F+   +  +  I    R  A++++EE MI A
Sbjct: 414 LEELHKMYQVLKSARDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILA 473

Query: 400 NVCAAIALRDSLGFGVYNVH--------TGFDPLLVENAVTVLQANDVEANAEELLTLPG 451
           N+ +A  +  +    +Y VH        TGF   L E  +      D+    E   T   
Sbjct: 474 NIASASLVEKAKEAALYRVHEPPGEERLTGFRDFLGELGL------DLSGGLEPSPT--D 525

Query: 452 FCALRRKLDALP-TQFLDSRIRRFQTFAEISTTPGPHFGLGLEAYATWTSPIRKYGDMVN 510
           +  L +++   P  + + + + R    A  +     HFGL L+ YA +TSPIR+Y D++ 
Sbjct: 526 YANLMKQIGERPDKELIQTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLL 585

Query: 511 HRLLKAMILQQSAEKPQ------------DDMTI-----QLAERRRANRMAERDVGDWLY 553
           HR +K +I +Q                  DDM        + ERR  +  A R+V DWL 
Sbjct: 586 HRAIKYLIAKQEGRNQDRWTPTGGYHYSFDDMDFYGEQCSMTERRADD--ATREVSDWLK 643

Query: 554 ARYLEDKVGTDVKFSAEIIDVTRGGLRIRLQDIGAVAFIPAPFLHSVRDELVCSADTGTV 613
             Y++D VG +++    + +VT  G  +RL ++     +    + ++ ++       G  
Sbjct: 644 CEYMQDHVGEELE--GVVANVTSFGFFVRLTELHIDGLV---HISTLANDYYHYDPIGQR 698

Query: 614 LIKGE---VAYRQSDIIEVNIAEVRMENRNV 641
           L+ GE     YR  D ++V +  V +++R +
Sbjct: 699 LV-GESFGAIYRLGDAVKVKVLAVNLDDRQI 728