Pairwise Alignments

Query, 647 a.a., exoribonuclease II from Rahnella sp. WP5

Subject, 813 a.a., exoribonuclease R from Marinobacter adhaerens HP15

 Score =  194 bits (493), Expect = 1e-53
 Identities = 188/667 (28%), Positives = 295/667 (44%), Gaps = 67/667 (10%)

Query: 22  VEGIVKGTEKGFGFLEVD-GQKSYFIPPPYMKKVMHGDRVIASLQTEKER---EVVQPET 77
           V G V G + GFGFL  D G    F+    M++V HGDRV A +    +R   E V  E 
Sbjct: 46  VTGRVIGHKDGFGFLVPDDGGSDLFLTARQMRQVFHGDRVAARVDRVDDRGRREGVIVEV 105

Query: 78  LVEPFLSRFVGRVTKKDDRLSIIPD-----HPLLRDAIQCRVARNINHEVSDGDWCVAE- 131
           L E   S+ VGR  ++     ++P+     H +L     C  AR+  + V D    V + 
Sbjct: 106 L-EYRTSQTVGRFFQESGISFVVPENARINHEVLIPQENCGNARHGQYVVVD---IVRQP 161

Query: 132 -MRRHPLKE-----GDHSFQAEITEWITTGADDLAPWWVTLARHNLEREAPKSDIAELRD 185
            +R  PL +     G+H       +      D    W   +     +  A   ++ E   
Sbjct: 162 TVRTQPLGKVVEVLGEHMAPGMEIDVAIRSYDIPHSWPPAVGE---QTAAIPEEVTE--K 216

Query: 186 EGLTREDLTALPFVTIDSGSTQDMDDALYVKDNGDGTLQMTVAIADPTAYVSEGSELDNI 245
           + + R+D+  L  VTID  + +D DDA+Y +    G  ++ VAIAD + YV  G+ LD  
Sbjct: 217 DKVNRKDIRNLRLVTIDDETARDFDDAVYCEPRARGGYRLLVAIADVSHYVRPGTPLDEE 276

Query: 246 AKKRAFTNYLPGFNIPMLPRELSDDICSLWPDVSRPVLACSVTVGADGSLGSDIRFFAAT 305
           A  R+ + Y P   +PMLP +LS+ +CSL P V R  +   +T+ A G++ S   F+ A 
Sbjct: 277 AVNRSTSVYFPDHVVPMLPEKLSNGLCSLNPGVDRLCMVADMTISAAGNI-SSYSFYQAV 335

Query: 306 IESKAKLAYDDVSDWLEADEKSEWQPASEVIAS---QIRLLKRVCDVRSAWRTEHALVFK 362
           + S A+L Y+ VS  LE  +  +     E  A+   Q+  L  +  +    RTE   +  
Sbjct: 336 MFSHARLTYNKVSTMLEHPDTEQGYKLCEQYANVLPQLHNLYGLYQLLRKARTERGAIDF 395

Query: 363 DRPDYRFVLGEKGNVLEIIAEHRRIANRIVEESMIAANVCAAIALRDSLGFGVYNVHTGF 422
           +  + + V      + EI+   R  A++I+EE M+ ANV  A  L+      +Y VH G 
Sbjct: 396 ETTETKIVFDADRKIEEIVPVQRNDAHKIIEECMLCANVATARFLKKHKLPALYRVHDGP 455

Query: 423 DPLLVENAVTVLQANDVEANAEELLTLPGFCALRRKL-DALPTQFLDSRIRRFQTFAEIS 481
               +      L    ++    +  T   +  L   + D      + + + R  + A  S
Sbjct: 456 SEERLNAVRLFLGELGLQLGGGDSPTSADYQELLNSIKDRSDANVIQTVMLRSLSQAVYS 515

Query: 482 TTPGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAMIL---------------QQSAEKP 526
              G HFGLG   YA +TSPIR+Y D++NHR +K++I                 + AE P
Sbjct: 516 PEEGGHFGLGYAGYAHFTSPIRRYPDLINHRAIKSVIHGGQPSKDVVPPPKPDPELAEYP 575

Query: 527 QDDMTIQ-------LAERRRANRMAERDVGDWLYARYLEDKVGTDVKFSAEIIDVTRGGL 579
            D   ++       +AERR  +  A RDV  WL   YL D VG +  +   I  V   G 
Sbjct: 576 YDMARMEQLGEHTSMAERRADD--ATRDVMAWLKCEYLSDHVGEE--YDGVIASVVPFGF 631

Query: 580 RIRL-----QDIGAVAFIPAPFLHSVRDELVCSADTGTVLIKGEVAYRQSDIIEVNIAEV 634
            + L     + +  V+ +   F H        SA    +  +  +++R  D + V +  V
Sbjct: 632 FVELSGVYIEGLVHVSTLSGDFFHH------DSAKHRLIGERTAMSFRLGDEVRVKVVRV 685

Query: 635 RMENRNV 641
            ME+R +
Sbjct: 686 GMEDRKI 692