Pairwise Alignments

Query, 650 a.a., DNA topoisomerase III from Rahnella sp. WP5

Subject, 702 a.a., DNA topoisomerase III (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  689 bits (1779), Expect = 0.0
 Identities = 359/662 (54%), Positives = 462/662 (69%), Gaps = 23/662 (3%)

Query: 2   MRLFIAEKPSLARAIADVLPKPHRRGDGYIACGNDQVVTWCVGHLLEQAQPDAYDSRFAR 61
           M L+IAEKPSL RAIADVLPKPH++G+G+I   N   V+WCVGHLLEQA+PDAY+  F  
Sbjct: 1   MILYIAEKPSLGRAIADVLPKPHKKGEGFIEDANGNCVSWCVGHLLEQAEPDAYNPDFKS 60

Query: 62  WSLADLPIIPEKWQLQPRSSVAKQLNVIKRLLLEASQVVHAGDPDREGQLLVDEVLDYLE 121
           W    LPI+PEKWQL+P+++   QL V+K+L+ +A  +V+AGDPDREGQLLVDEV+ YL 
Sbjct: 61  WKFEHLPIVPEKWQLKPKAATRSQLTVLKKLIKQADTLVNAGDPDREGQLLVDEVIAYLG 120

Query: 122 LTPEKRHATQRCLINDLNPQAVERAIERLRDNRDFIPLCVSALARARADWLYGINMTRAY 181
           +T +K   TQR LI+DLNPQAV+RA+ +LR NR+FIPL  SALAR+RADWLYG+NMTRAY
Sbjct: 121 VTGDKLQQTQRLLISDLNPQAVKRALSQLRSNREFIPLSTSALARSRADWLYGMNMTRAY 180

Query: 182 TILGRNAGYNGVLSVGRVQTPVLGLVVRRDEDIENFVPKDFFEVKAHIVTPAEEHFVALW 241
           TI G+  GY GVLSVGRVQTP+LGL+VRRDE+I +F  K F+EV AH+VT  ++ F A W
Sbjct: 181 TIQGKKVGYQGVLSVGRVQTPLLGLIVRRDEEIAHFQSKPFYEVLAHLVTDKQQFFSAKW 240

Query: 242 QPSDSCEPYQDEEGRLLHRPLADHVVARIAGQPAMVTGYNDKRENDIAPLPFSLSTLQIE 301
           QPS++C+PY D+EGR+L + LA +VV RI  +PA VT  + K +   APLP+SLS LQI+
Sbjct: 241 QPSEACQPYMDDEGRVLSKGLAQNVVRRITDKPAKVTQLSTKDKQQSAPLPYSLSALQID 300

Query: 302 GSKAFGLSAQQILDICQKLYETHKLITYPRSDCRYLPEEHFAGRHAVLNAIGVHRPDLMP 361
            +K FG+SA+++LD CQ LYE HKLITYPRSD RYLP E      +VLNAI    P+L+ 
Sbjct: 301 AAKRFGMSAKEVLDTCQSLYERHKLITYPRSDSRYLPTEQHGLASSVLNAITSGAPELVA 360

Query: 362 -QPAVDTDLRNRCWDDKKVDAHHAIIPTARSSNV-NLTDDERKIYGLVARQYLMQFCPDA 419
              A +  L+++ WDDKKVDAHHAIIPT +  N+ +L+  ER++Y  +ARQYL QF P  
Sbjct: 361 HSEAPNPRLKSKAWDDKKVDAHHAIIPTEKQPNLGSLSQRERQLYLHIARQYLAQFYPAY 420

Query: 420 VYRKCVIDLDIAGGKFIAKARFLAEAGWRTLLG------------------SKERDEENE 461
            Y +  +++ I GG F  KAR     GW+ L                     K++DE   
Sbjct: 421 CYSETAVEVTIEGGLFKTKARQDKSLGWKQLFAREEGERKDTSNTETFAQDDKDKDEGEY 480

Query: 462 GTPLPVVAKGDELLCERGEVVERQTQPPRPFTDATLLSAMTGIARFVQDKELKKILRATD 521
              LP +  G  L C +GE+VE+QTQPP+ FTDATLL AMTGI R+V D E++KIL+ TD
Sbjct: 481 AGQLPPLILGQVLHCNQGELVEKQTQPPKAFTDATLLGAMTGINRYVTDPEIRKILKETD 540

Query: 522 GLGTEATRAGIIELLFRREFLYKKGRYIHSSDTGRALIHSLPDIAARPDMTADWESTLTR 581
           GLGTEATRAGIIELLF+R F+ ++G+ I +++ G+ LI+SLP  A  PDMTA WE++L  
Sbjct: 541 GLGTEATRAGIIELLFKRGFIQRQGKSIVATEVGKGLINSLPLSATTPDMTALWEASLNG 600

Query: 582 ISEKSCRYQDFMQPLVATLQNLIMQAKTNRVSSAFRSLPSKPAGAAAKGKSAPKRRKAST 641
           I  K   YQ FMQPL+ TL +LI  A   ++ SA   L  +    AA  KS    RKA  
Sbjct: 601 ICHKDISYQGFMQPLLGTLHSLIQNAGA-QLPSALNGLKGQGFKRAATKKSG--YRKAGV 657

Query: 642 KG 643
           +G
Sbjct: 658 RG 659