Pairwise Alignments

Query, 650 a.a., DNA topoisomerase III from Rahnella sp. WP5

Subject, 862 a.a., DNA topoisomerase III (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  204 bits (520), Expect = 1e-56
 Identities = 147/453 (32%), Positives = 219/453 (48%), Gaps = 48/453 (10%)

Query: 224 EVKAHIVTPAEEHFVALWQPSDSCEPYQDEEGRLLHRPLADHVVARIAGQPAMVTGYNDK 283
           E+ A      ++ F  +W       P    E R+     AD +     G+  +V     +
Sbjct: 313 EIAAPEAAANDDRFRGVWH-----RPPDRRETRVDSGEEADAIATACTGKLGIVESVQGR 367

Query: 284 RENDIAPLPFSLSTLQIEGSKAFGLSAQQILDICQKLYETHKLITYPRSDCRYLPEEHFA 343
                 PLPF L+TLQ E +  FG SA+  L   Q LYET KLITYPR+D R+L +E F 
Sbjct: 368 AGTQQPPLPFDLTTLQREANTRFGYSAKDTLTHAQSLYETRKLITYPRTDSRHLTKELFG 427

Query: 344 GRHAVLNAI-GVHRPDLMPQPAV-------DTDLRNRCWDDKKVDAHHAIIPTARSSNV- 394
               +LN +  VH   L P+  +           R  C DD+KV  HHAIIPTAR  N+ 
Sbjct: 428 ---EILNHLRAVHH--LYPEETMLAVGRIKSGKARFACVDDRKVTDHHAIIPTARKGNLT 482

Query: 395 NLTDDERKIYGLVARQYLMQFCPDAVYRKCVIDLDIAGGKFIAKARFLAEAGWRTLLGSK 454
            L+  ER IY +V R+ +  FCP+A +    + + +    FIAK +   + GW  +    
Sbjct: 483 QLSAPERNIYDMVCRRTIAAFCPEAKFSTSTVTVMVGEHPFIAKGKVFKDKGWMVV---- 538

Query: 455 ERDEENEGTPLPVVAKGDELLCERGEVVERQTQPPRPFTDATLLSAMTGIARFVQDKELK 514
           E     E TPLP + KG +LL      V+RQT+ P  FTDA+LL+AM    R V+D  L+
Sbjct: 539 EPWRTAEDTPLPQLRKGSKLLTLDVGPVKRQTKAPAHFTDASLLAAMETAGRLVEDDALR 598

Query: 515 KILRATDGLGTEATRAGIIELLFRREFLYKKGRYIHSSDTGRALIHS----LPDIAARPD 570
           + ++   GLGT ATRA +IE L  R ++ K+G+ + ++D G  +  +    LPD+A+ P+
Sbjct: 599 QAMKER-GLGTPATRAQVIETLVARGYVAKQGKKLVATDRGMQVAETVTTLLPDVAS-PE 656

Query: 571 MTADWESTLTRISEKSCRYQDFMQPLVATLQNLIMQAKTNRVSSAFRSLPSK-------- 622
           +T  WE  L  I   +  Y  FM+ +  ++ + + + +   +    R + ++        
Sbjct: 657 LTGQWEKRLKDIEAGADSYPAFMRSIRESVWHGVHRIRNRDIRPLLRDIAARNSRPPDGR 716

Query: 623 -----------PAGAAAKGKSAPKRRKASTKGK 644
                      P G A KG S  K    ST  +
Sbjct: 717 CPLCGGDVVETPRGFACKGDSKGKTEGDSTAAR 749



 Score =  148 bits (374), Expect = 9e-40
 Identities = 91/227 (40%), Positives = 141/227 (62%), Gaps = 14/227 (6%)

Query: 4   LFIAEKPSLARAIADVLPKPHRRGDGYIACGNDQVVTWCVGHLLEQAQPDAYDSRFA-RW 62
           L IAEKPS+AR IA ++    RR  GY+  G D +V+W VGHL+  A+P+  D  +A RW
Sbjct: 5   LIIAEKPSVAREIAPLVGAQGRRA-GYLE-GPDHLVSWAVGHLVGIAEPEEQDEAWAGRW 62

Query: 63  SLADLPIIPEKWQLQPRSSVAKQLNVIKRLLLE--ASQVVHAGDPDREGQLLVDEVLDYL 120
           +L  LP++P ++QL+     A Q +V++RLLL+   + +V+A D  REG+L+   +  YL
Sbjct: 63  TLEQLPMLPPRFQLRVLPETADQFSVLQRLLLDDRVTGIVNATDAGREGELIFRRI--YL 120

Query: 121 ELTPEKRHATQRCLINDLNPQAVERAIERLRDNRDFIPLCVSALARARADWLYGINMTRA 180
               +K    +R   +D+  + + +++ RL  + +   L ++A ARA ADWL G+N +R 
Sbjct: 121 VAGCDK--PVRRLWASDMTEEGLRKSLARLLPDEEKRNLGLAAFARAEADWLVGMNFSRL 178

Query: 181 YTILGRNAGYNGVLSVGRVQTPVLGLVVRRDEDIENFVPKDFFEVKA 227
           +T+        G++SVGRVQTPVL L+  R  DIE+F P+DF+ V+A
Sbjct: 179 FTVKS-----GGLVSVGRVQTPVLCLLADRRRDIEHFTPQDFWTVEA 220