Pairwise Alignments

Query, 376 a.a., hypothetical protein from Rahnella sp. WP5

Subject, 499 a.a., membrane protein from Burkholderia phytofirmans PsJN

 Score =  242 bits (617), Expect = 2e-68
 Identities = 156/384 (40%), Positives = 214/384 (55%), Gaps = 32/384 (8%)

Query: 13  IALAILVALSLAACSGSG----GGGSSHTAKT----STTGSATTGDGTGSGTGTSTGGDG 64
           IA ++   LSL AC GSG    G GSS +       STTGS +TG G GSG+G   G + 
Sbjct: 15  IAASVAAMLSLGACGGSGSLSSGTGSSGSGSAGGTLSTTGSGSTGSG-GSGSGAGAGAN- 72

Query: 65  TSTAGNGSGTGSGTGAGTGSGGGTGTGGGTGTTPSTTLASATILSSAGTAVSGLGTQVSS 124
           T+T  NGSGTG+GTG GTG+G GTGT        +    +  ++S AG+AV+G+GT + S
Sbjct: 73  TTTGSNGSGTGTGTGTGTGTGTGTGTTPVANALGTVVGNTGGVVSDAGSAVTGIGTVIGS 132

Query: 125 IATQTPISNIPVAGTGVVTIIDSTGKAVTDVGSGVKNGLGQLGTNPNAVGTTVAGVPIAV 184
             T   +S+      G   I+   G AV+ +G+GV  GLGQLGT  NAVGTTV+ V   V
Sbjct: 133 -QTLPGVSSQTTQSAG--GIVQQVGSAVSTLGNGVSQGLGQLGTGGNAVGTTVSSVGGVV 189

Query: 185 ADLGTGVSGLGTSLAANTTG--TPVSGVTSAAGGLVNNVGKVVTTTGNGLATNVQTGELS 242
           + +G  V+  G  + +  +G   P+S +T+  GG+VN +G  VT  G  L T + TG + 
Sbjct: 190 SHVGGAVTDAGNLVTSLGSGPLAPLSAITTPLGGVVNTLGGAVTNGGGTLTTALSTGPVQ 249

Query: 243 KVTTATTGIVTPVVAKVQGTTQAVGGATGLGAPVNGLLNQVGTTVSGAGTQLATT--TPA 300
           +VT   +  +TP+ + V  TTQ VG  TGLGAP+NGLL+ VG  +  AG  L+ T   P 
Sbjct: 250 QVTQTLSTAITPITSMVAATTQTVGNTTGLGAPLNGLLSTVGGGLGKAGALLSATGGNPV 309

Query: 301 LAGLGQVVTGTGQAVSKTGTILV------PASSTTTSTASNSGGISAGAGASVTQS-GGL 353
            A LG  VT TG  V+  G +L       P +  T++    +GG S+G  A +T + GGL
Sbjct: 310 TAALGHTVTDTGATVASVGGLLTGGSGGNPLAPLTSALGGLTGGTSSGPLAPLTSALGGL 369

Query: 354 LAGVG--------TTVGGLTGGLG 369
             G G        + +GGLTG +G
Sbjct: 370 TGGTGSGPLAPLTSALGGLTGAVG 393



 Score =  127 bits (319), Expect = 7e-34
 Identities = 131/445 (29%), Positives = 185/445 (41%), Gaps = 103/445 (23%)

Query: 27  SGSGGGGSSHTA-KTSTTGSATTGDGTGSGTGTSTG-GDGTSTAGNGSGTGSG-TGAGTG 83
           +GSGG GS   A   +TTGS  +G GTG+GTGT TG G GT+   N  GT  G TG    
Sbjct: 58  TGSGGSGSGAGAGANTTTGSNGSGTGTGTGTGTGTGTGTGTTPVANALGTVVGNTGGVVS 117

Query: 84  SGGGTGTGGGT--------GTTPSTTLASATI------------------LSSAGTAVSG 117
             G   TG GT        G +  TT ++  I                  L   GT  + 
Sbjct: 118 DAGSAVTGIGTVIGSQTLPGVSSQTTQSAGGIVQQVGSAVSTLGNGVSQGLGQLGTGGNA 177

Query: 118 LGTQVSSIATQTPISNIPVAGTGVVTIIDSTGK-------AVTDVGSGVKNGLGQLGTNP 170
           +GT VSS+     +S++  A T    ++ S G        A+T    GV N LG   TN 
Sbjct: 178 VGTTVSSVGGV--VSHVGGAVTDAGNLVTSLGSGPLAPLSAITTPLGGVVNTLGGAVTNG 235

Query: 171 NAVGTTVAG---VPIAVADLGTGVSGLGTSLAA------NTTG--TPVSGVTSAAGGLVN 219
               TT      V      L T ++ + + +AA      NTTG   P++G+ S  GG + 
Sbjct: 236 GGTLTTALSTGPVQQVTQTLSTAITPITSMVAATTQTVGNTTGLGAPLNGLLSTVGGGLG 295

Query: 220 NVGKVVTTTGN------------------------------------------GLATNVQ 237
             G +++ TG                                           GL     
Sbjct: 296 KAGALLSATGGNPVTAALGHTVTDTGATVASVGGLLTGGSGGNPLAPLTSALGGLTGGTS 355

Query: 238 TGELSKVTTATTGI--------VTPVVAKVQGTTQAVGGATGLG---APVNGLLNQVGTT 286
           +G L+ +T+A  G+        + P+ + + G T AVGGA+  G   APV GLL+ V  +
Sbjct: 356 SGPLAPLTSALGGLTGGTGSGPLAPLTSALGGLTGAVGGASSGGSPLAPVTGLLSTVTGS 415

Query: 287 VSGAGTQLATTTPALAGLGQVVTGTGQAVSKTGTILVPASSTTTSTASNSGGISAGAGAS 346
           +SGA    +     + GL   VTG    V+ T +   PA++T  ++ ++  G+S      
Sbjct: 416 LSGAAGGSSGPLAPVTGLLSGVTGALGGVTTTAS-AAPATTTAAASTNSGAGLSLSTSTG 474

Query: 347 VTQSGGLLAGVGTTVGGLTGGLGLK 371
              S   LA V + VGGL GGLG K
Sbjct: 475 KGTSNNPLAPVTSLVGGLLGGLGKK 499