Pairwise Alignments

Query, 437 a.a., PAS domain-containing protein from Rahnella sp. WP5

Subject, 416 a.a., putative two-component system sensor histidine kinase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  134 bits (337), Expect = 5e-36
 Identities = 109/431 (25%), Positives = 195/431 (45%), Gaps = 66/431 (15%)

Query: 13  LILCSLSPLGGVVAYLLLWFFPQQSLYLKFLTLFILCVTLVYFSYHFFQQLLYKINVISN 72
           LI+CSL  +GG+V YL        ++  K                 FF  +  + N  S 
Sbjct: 41  LIICSLFQIGGIVTYL-------NNINRKLRL--------------FFDAIEDRDNTFSY 79

Query: 73  LLEAVEQEDFSLRGVTSGEGVFEGVIEQINAISGQLSRHRQQQREMDFLLQKVISNITVA 132
             + + +E   L                +N I+  L++ +   ++ +   + ++  +   
Sbjct: 80  PEQGINEEQQQLN-------------RSLNRINALLAQTKMDYQKQEHFYRSLLEKVPNG 126

Query: 133 IFAIDGNNRLMWCNDAASRMLGTSLEKLIGEKCSHWQLDTLLQNANREHPVESSHAGRPG 192
           I A + + ++++ N+ A  +L  ++E L      + QL+ +LQN      +  S +    
Sbjct: 127 IIAWNNSKKIIFVNNTALTLL--NIESLT----LYSQLENILQNEKNRKRLSLSQS---- 176

Query: 193 RYKVSSDTYMVDGIQNVLLFVSDVDDMLRKEEQKAWQNLLRVISHEINNSLSPIASISQM 252
           + K+  +T         LL + D+DD L + E ++W  L  V++HEI N+++PI S+SQ 
Sbjct: 177 QMKLQDETI-------TLLSIQDIDDRLNENESESWSKLSHVLTHEIMNTIAPIISLSQT 229

Query: 253 LQQHYRRHTENLPEGFAEGIDLINRRAKELIAFISSYRQLSKLAPPVKAPLDFAALIAEL 312
           L  +       + E    G+ +I  +++ L+ F  S+R LS L  P K     + L+  L
Sbjct: 230 LASY-----PEISEKGIRGLHIIQAQSERLMEFTESFRHLSYLPQPEKRLFSLSDLLHNL 284

Query: 313 PLL----FAHRKITLK---GPAPLRVNVDRVQIHQLLINLIKNADEATSDTTAPVCIEWS 365
             L    F    I+      P P+    D  Q+ Q+ +NL+KNA +A            +
Sbjct: 285 EELLQTNFQENNISFTLRCSPEPMMTEGDEKQLSQVFLNLLKNAMQALEGHPHGELSLQA 344

Query: 366 EEKGCLFVTILDQGVGLTNP--KNLFVPFYTTKPNGSGIGLILCRQIAESHGGYLSL-EN 422
           E+   + + I D G G+       +F+PF+TTK  G+GIGL LC++I   H G+L++ E+
Sbjct: 345 EQDEYIVIDITDNGPGIPPEIMDKVFIPFFTTKSEGTGIGLSLCKEIIRRHEGHLAIKES 404

Query: 423 RHDRTGCRVTL 433
           R  +T   + L
Sbjct: 405 RAGKTVFHIEL 415