Pairwise Alignments

Query, 368 a.a., ABC transporter permease from Rahnella sp. WP5

Subject, 370 a.a., membrane protein, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  278 bits (710), Expect = 2e-79
 Identities = 138/367 (37%), Positives = 228/367 (62%), Gaps = 6/367 (1%)

Query: 4   RLWTLIRKELQSLLREPQTRTILILPVVLQVILFPFAATLEVTNATIAIYNQDNGSHSVE 63
           R+  LIRKE  +L ++ ++R ++I+P ++Q I+F +AAT +V     A+ ++D    S E
Sbjct: 6   RIMALIRKEFLALFKDRRSRVVVIIPPLIQTIVFGYAATFDVERVPCAVMDEDRSGASRE 65

Query: 64  LTQRFAHAKAFSHLLLLKSPQEIQPTLDKQKALLLIRFPADFSRNLASNQPAKLQIILDG 123
           L  R   ++AF   L+    + +   +D+ + ++ +R P  F R + S     +Q ++DG
Sbjct: 66  LLARLEGSRAFRVALVATDARMMADAVDRGEVVMALRIPQGFERAVHSGA-VTVQAVVDG 124

Query: 124 RNSNSAQIAANYLQQIVKNYQ---LELMTGQPKSNNSELVIRNWYNPNLNYKWFVVPSLI 180
           RNSN+  +A NYLQ +V  Y    L  ++G     N  LV+R WYNPNL  +WF VP ++
Sbjct: 125 RNSNTGTLAVNYLQTVVAGYNETVLHRISGAGPPAN--LVMRAWYNPNLLSRWFFVPGIL 182

Query: 181 AMITTIGVMIVTSLSVAREREQGTLDQLLVSPLATWQIFVGKAVPAQIVAIAQATIVLGV 240
           AM+T +  ++VT+LSVAREREQGT DQLLV+P    ++ VGKAVP  ++ + + T +L +
Sbjct: 183 AMVTLVVTLLVTALSVAREREQGTFDQLLVAPYRPAEVLVGKAVPGMVIGLVEVTGILCL 242

Query: 241 GIWGYQIPFSGSVLLFYFTMLIYGLSLVGFGLLISALSSTQQQAFIGVFVFMMPAILLSG 300
            ++ + +P  GS+L  Y  + ++  S+VG GL++S+L++T QQ  +G F+F MPA++LSG
Sbjct: 243 AVYWFDVPMRGSLLTLYAGLGLFLFSVVGVGLMVSSLAATMQQGLLGTFLFTMPAVILSG 302

Query: 301 YVSPVENMPVWLQNLTWINPIRHFTDITKQIYLKDASLDIVWGSLWPLLVIAAITGSAAY 360
           + +PV NM   ++ +T +NP+R+   I + ++L+ A   ++   LWPL  I     + A 
Sbjct: 303 FATPVANMADGVRQMTVVNPLRYILVIIRSVFLEGADAAVLARELWPLAAIGLFCMTVAT 362

Query: 361 WMFRRKV 367
           W+FRR+V
Sbjct: 363 WLFRRRV 369