Pairwise Alignments

Query, 203 a.a., sigma-70 family RNA polymerase sigma factor from Rhodopseudomonas palustris CGA009

Subject, 202 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily from Marinobacter adhaerens HP15

 Score = 81.3 bits (199), Expect = 1e-20
 Identities = 52/171 (30%), Positives = 89/171 (52%), Gaps = 2/171 (1%)

Query: 26  LLASIANGDRTAMHTLYARHNVRVYRFILRMVRDAATAEDLVSQVFLDVWRTARQF-EGR 84
           L+  +A  DR A   LY     ++   +LR++RD   A+D++   +L +W+ A QF +G+
Sbjct: 31  LIHRVAQKDRQAFALLYQATAPKLLGTVLRILRDKGWADDVIQDSYLKIWQKAEQFQDGK 90

Query: 85  AQVSTWLLSIARFKALTALRQR-QHEDIDQDDVLEIADGSDSPETALDRSRTSDILRACI 143
           +   TWL+SIAR  A+  LR+       + D++ E+     S +  L+  R +  L  CI
Sbjct: 91  SSPITWLVSIARNGAIDELRKHPAGRTTNSDELDEMPGWQTSAQEQLEDQRAATQLNHCI 150

Query: 144 AKLSPAHREIINLVYYHEKSVEEVGRIVGIPQSTVKTRMFYARKQLAELLK 194
            +L    ++++ L Y +  S E++      P +TVKT +  A KQL   L+
Sbjct: 151 DQLEKDRQDMVRLAYLNGWSREDLASQFEQPVNTVKTWLHRALKQLKRCLE 201