Pairwise Alignments

Query, 203 a.a., sigma-70 family RNA polymerase sigma factor from Rhodopseudomonas palustris CGA009

Subject, 182 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 79.0 bits (193), Expect = 5e-20
 Identities = 45/167 (26%), Positives = 89/167 (53%), Gaps = 3/167 (1%)

Query: 30  IANGDRTAMHTLYARHNVRVYRFILRMVRDAATAEDLVSQVFLDVWRTARQFEGRAQVST 89
           I +G+         R++  +Y  ++++V     AE+L+  +FL  +R   +++G  + ST
Sbjct: 13  ILDGETEYFSVFLDRYSRPLYTLVVQIVGCPEDAEELLQDIFLKAFRNLNRYKGECRFST 72

Query: 90  WLLSIARFKALTALRQRQHE--DIDQDDVLEIADG-SDSPETALDRSRTSDILRACIAKL 146
           W+  IA   A++A R+++ E   I+++ +  + D  +D+     +     + L   I +L
Sbjct: 73  WIYRIAYNAAISATRKKKQEFLYIEENTINNVPDEMADNVLAPAETEEQLERLEMAIDQL 132

Query: 147 SPAHREIINLVYYHEKSVEEVGRIVGIPQSTVKTRMFYARKQLAELL 193
           S   + +I L YY EKS+EE+G ++ +  S VK R+   RK++  L+
Sbjct: 133 SGEEKALITLFYYEEKSMEEIGEVLKLSISNVKVRLHRTRKKICVLM 179