Pairwise Alignments

Query, 597 a.a., ABC transporter permease subunit from Rhodopseudomonas palustris CGA009

Subject, 275 a.a., ABC-type spermidine/putrescine transport system, permease component II from Pseudomonas stutzeri RCH2

 Score =  201 bits (511), Expect = 3e-56
 Identities = 99/233 (42%), Positives = 152/233 (65%)

Query: 342 WTVRVMGGVVVAVLILPIVVVMVISFSSASYLTFPPPGFSLRWYEQFFSDTNWMRAFWTS 401
           + +R++  +V+  LI+P++V++ +SF+S S+L +P  GFS+RWYE  FS  +WMR+   S
Sbjct: 15  YALRILCALVLLFLIVPVLVIVPLSFNSGSFLVYPLQGFSMRWYEALFSSADWMRSLKNS 74

Query: 402 ALIALVSAVIAVGLGTCAALGIVRGDIRGKSAIMLLLVSPIIVPPVVLGLSLYTLFLKFD 461
            LIA  +  +AV LGT AA+G+ R + RGK+ +M +L+SP++VP V++G++ Y  F    
Sbjct: 75  MLIAPAATFLAVVLGTLAAVGLTRAEFRGKALLMTILISPMVVPVVIIGVASYLFFAPLG 134

Query: 462 LIGSVFGLAAAHAIGGLPIVVVILAAALQGVDKRLEQAAAVHGASSLTVLRLVTLPAIAP 521
           +  S   L   HA+ G+P V++ ++A LQG +  L +AAA  GAS LT    VTLP IAP
Sbjct: 135 MGNSYLSLILVHAVLGVPFVIITVSATLQGFNYNLVRAAASLGASPLTAFFRVTLPLIAP 194

Query: 522 GLAAATFFAFLHSFDELVLTLFLSSAQLKTLPLMLWGDINYRLNPVLAVVSTL 574
           G+ +   FAF  SFDE+V+TLFL+  +  TLP  ++  I   L+P +A  +TL
Sbjct: 195 GVISGALFAFATSFDEVVVTLFLAGPEQITLPRQMFSGIRENLSPTIAAAATL 247



 Score = 76.3 bits (186), Expect = 2e-18
 Identities = 63/266 (23%), Positives = 120/266 (45%), Gaps = 39/266 (14%)

Query: 26  ALLLLPAVAFLGFIYLLPLIDLIRISISGPSWLTY---------FQRVFAVPLYWESLVR 76
           AL +L A+  L  I  +P++ ++ +S +  S+L Y         ++ +F+   +  SL  
Sbjct: 16  ALRILCALVLLFLI--VPVLVIVPLSFNSGSFLVYPLQGFSMRWYEALFSSADWMRSLKN 73

Query: 77  TMQISVTVAFLCLLFGYPTALLIHRTQGLTRALIATAIVLPYFIAILI---RTYAWMVLL 133
           +M I+    FL ++ G   A+ + R +   +AL+ T ++ P  + ++I    +Y +   L
Sbjct: 74  SMLIAPAATFLAVVLGTLAAVGLTRAEFRGKALLMTILISPMVVPVVIIGVASYLFFAPL 133

Query: 134 GRTGPVNKLLVAIGILGEPVQLLFHRGTVLLGMTAVLLPLMVLTIYSSVSRLDPGLTRAA 193
           G       L++   +LG                    +P +++T+ +++   +  L RAA
Sbjct: 134 GMGNSYLSLILVHAVLG--------------------VPFVIITVSATLQGFNYNLVRAA 173

Query: 194 LASGAGPIAVFWRVLLPLTLPGIGAGFLLVFVAAIGFFITPTLLGGPGD-----QMFAMH 248
            + GA P+  F+RV LPL  PG+ +G L  F  +    +    L GP       QMF+  
Sbjct: 174 ASLGASPLTAFFRVTLPLIAPGVISGALFAFATSFDEVVVTLFLAGPEQITLPRQMFSGI 233

Query: 249 ITQQADSVTSEGFLQALGVVLLLITL 274
               + ++ +   L     + LL+TL
Sbjct: 234 RENLSPTIAAAATLLIGFSIALLLTL 259