Pairwise Alignments

Query, 597 a.a., ABC transporter permease subunit from Rhodopseudomonas palustris CGA009

Subject, 275 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  189 bits (480), Expect = 1e-52
 Identities = 94/227 (41%), Positives = 139/227 (61%)

Query: 351 VVAVLILPIVVVMVISFSSASYLTFPPPGFSLRWYEQFFSDTNWMRAFWTSALIALVSAV 410
           V+  L+ PI+ ++ +SF+   +LT+P  GFSLRWY  F +D  W+RA   S +I +VS +
Sbjct: 25  VLVFLMAPILAIIPLSFNGGQFLTYPLQGFSLRWYAAFLTDPVWIRALRNSLIIGIVSTI 84

Query: 411 IAVGLGTCAALGIVRGDIRGKSAIMLLLVSPIIVPPVVLGLSLYTLFLKFDLIGSVFGLA 470
           +A GLGT A+LG+VR   RGK  +M +L+SP+IVP V+  +  Y  F    L  +  GL 
Sbjct: 85  LATGLGTLASLGLVRAKFRGKGLVMAVLLSPMIVPVVITAVGFYLFFAPLGLTANYPGLI 144

Query: 471 AAHAIGGLPIVVVILAAALQGVDKRLEQAAAVHGASSLTVLRLVTLPAIAPGLAAATFFA 530
            AH +   P VV+ + A LQG D  L +AAA  GA  +T  R V LP IAPG+A+   FA
Sbjct: 145 LAHTVLAAPFVVISVTATLQGFDMNLARAAASLGADQVTTFRRVILPLIAPGVASGALFA 204

Query: 531 FLHSFDELVLTLFLSSAQLKTLPLMLWGDINYRLNPVLAVVSTLEVL 577
           F  SFDE+V+ L ++  + +TLP  ++  I   ++P +  V+T+ +L
Sbjct: 205 FATSFDEVVVVLLVAGPEQRTLPREMFSGIRENISPTITAVATVLIL 251



 Score = 73.6 bits (179), Expect = 1e-17
 Identities = 57/262 (21%), Positives = 114/262 (43%), Gaps = 27/262 (10%)

Query: 27  LLLLPAVAFLGFIYLLPLIDLIRISISGPSWLTYFQRVFAV---------PLYWESLVRT 77
           LL + AV  L F+ + P++ +I +S +G  +LTY  + F++         P++  +L  +
Sbjct: 17  LLWVGAVGVLVFL-MAPILAIIPLSFNGGQFLTYPLQGFSLRWYAAFLTDPVWIRALRNS 75

Query: 78  MQISVTVAFLCLLFGYPTALLIHRTQGLTRALIATAIVLPYFIAILIRTYAWMVLLGRTG 137
           + I +    L    G   +L + R +   + L+   ++ P  + ++I    + +      
Sbjct: 76  LIIGIVSTILATGLGTLASLGLVRAKFRGKGLVMAVLLSPMIVPVVITAVGFYLFFA--- 132

Query: 138 PVNKLLVAIGILGEPVQLLFHRGTVLLGMTAVLLPLMVLTIYSSVSRLDPGLTRAALASG 197
                         P+ L  +   ++L  T +  P +V+++ +++   D  L RAA + G
Sbjct: 133 --------------PLGLTANYPGLILAHTVLAAPFVVISVTATLQGFDMNLARAAASLG 178

Query: 198 AGPIAVFWRVLLPLTLPGIGAGFLLVFVAAIGFFITPTLLGGPGDQMFAMHITQQADSVT 257
           A  +  F RV+LPL  PG+ +G L  F  +    +   L+ GP  +     +        
Sbjct: 179 ADQVTTFRRVILPLIAPGVASGALFAFATSFDEVVVVLLVAGPEQRTLPREMFSGIRENI 238

Query: 258 SEGFLQALGVVLLLITLAVVAI 279
           S        V++L  TL ++A+
Sbjct: 239 SPTITAVATVLILFSTLLLIAL 260