Pairwise Alignments

Query, 320 a.a., 4-hydroxy-3-methylbut-2-enyl diphosphate reductase from Rhodopseudomonas palustris CGA009

Subject, 318 a.a., hydroxymethylbutenyl pyrophosphate reductase (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  402 bits (1033), Expect = e-117
 Identities = 201/313 (64%), Positives = 237/313 (75%), Gaps = 1/313 (0%)

Query: 6   PLKIVLCSPRGFCAGVVRAIDTVERALALYGAPVYVRHEIVHNKYVVDSLRAKGAIFVEE 65
           PL + L +PRGFCAGV RAI  VE AL  +GAPVYVRHEIVHNKYVVD LRAKGA+FV+E
Sbjct: 5   PLTLYLAAPRGFCAGVDRAIKIVEMALEKWGAPVYVRHEIVHNKYVVDGLRAKGAVFVKE 64

Query: 66  LEEIPDTKAPVVFSAHGVPKSVPEHALSRNFFSIDATCPLVTKVHREAAIHFKRGREILL 125
           L++ PD + PV+FSAHGVPK+VP  A  R    +DATCPLV+KVH EA  H   G ++++
Sbjct: 65  LDDCPDDR-PVIFSAHGVPKAVPAEATRREMVYVDATCPLVSKVHIEAERHHAGGLQMVM 123

Query: 126 IGHSHHPEVVGTLGQLPAGAVTLIETAADAEAYQPKDPNNLAFVTQTTLSIDDTAGIVTV 185
           IGH+ HPE VGT+GQLP G V L+ET AD     P+DP+ LAF+TQTTLS+DDTA IV  
Sbjct: 124 IGHAGHPETVGTMGQLPDGEVILVETVADVATITPRDPDKLAFITQTTLSVDDTADIVAA 183

Query: 186 LRERFPNISGPHKEDICYATTNRQAAVKKVAPVVDAMIVVGAPNSSNSQRLREVAEREGC 245
           L+ RFP I GPHKEDICYATTNRQ AVK +AP  DAM+V+GAPNSSNS+RL EV    GC
Sbjct: 184 LQARFPAIVGPHKEDICYATTNRQGAVKAMAPKADAMLVIGAPNSSNSKRLVEVGRSAGC 243

Query: 246 KVAVLVQRASDLDWSQFEGIKVLGLTAGASAPEVIVEEIMGAFAERFDLSVETVSAAEEN 305
             A LVQRA D+DW   EGI  +G+TAGASAPEV+V E++ AF  RFDL+VE V  A+EN
Sbjct: 244 AYAQLVQRAEDIDWRALEGISSIGITAGASAPEVLVNEVIEAFRTRFDLTVEQVETAQEN 303

Query: 306 EFFPVPRVLRPDA 318
             F VPRVLR  A
Sbjct: 304 VEFKVPRVLREPA 316