Pairwise Alignments

Query, 454 a.a., proton-conducting transporter membrane subunit from Rhodopseudomonas palustris CGA009

Subject, 502 a.a., NADH dehydrogenase (quinone) (NCBI) from Rhodospirillum rubrum S1H

 Score =  124 bits (310), Expect = 9e-33
 Identities = 120/452 (26%), Positives = 194/452 (42%), Gaps = 54/452 (11%)

Query: 11  PLVVLAIAAVAAMMLVPLARLQIVQASAAAGLAIAAALVLLRIG--------APAA---- 58
           P++ + +  +AA + + L R  +  A A   L IA   + + +G         P+A    
Sbjct: 7   PILQVVVPLMAAPVCILLRRPGLCWAWA---LLIALTTLTMAVGLLAGVLTHGPSAYHLG 63

Query: 59  ----PMGALFTDDGPARFGIVFACLVSLGALVFLRTGHPAKEAPS-------LLVLVAIG 107
               P G     D  +   +V     +   +V+ R    A+  P        L +L   G
Sbjct: 64  DWSPPWGIELHVDLLSALVLVLVTATASLVIVYARASFAAEIDPGHHTLAYCLFLLCLTG 123

Query: 108 AATLAGAGHAATLFLGIEILSLSLIALFAFRLTRQGLEAAYKFLVMSGLASSALLLGIAL 167
              +A  G A  LF+ +EI SLS  AL A    R+ L AAY +L++  + ++  ++GI  
Sbjct: 124 LLGMAITGDAFNLFVFLEISSLSSYALVALGRDRRALYAAYHYLILGTVGATFYVIGIGF 183

Query: 168 IFAETGALDFAGWGGRGALTAF------GTALLLAGLAFKFSLVPFHMWTPDAFEAAPAS 221
           ++  TG L+      R    A       G   L  GL+ K +L P H W P A+  AP++
Sbjct: 184 LYMMTGTLNMNDLAQRLPAVAHSRTAVAGVVFLGVGLSLKLALFPLHKWLPAAYSYAPSA 243

Query: 222 AATLAGVVSKSAVAIVILRL-------ALTAH-LPEPVWSQGLA-ALGGASVLIGNLLAL 272
                   S      V++RL       A +A+ LP PV ++ +   L  A++L G+  A+
Sbjct: 244 VGAFLAATSTKVAFYVMVRLFLGVLAPAFSANLLPGPVSAREMVMVLALAAILSGSFSAI 303

Query: 273 RQPQLPRMLGYSTIAHSGYIAL--------IIASGTPHAGEAVLFYLAIYAPAMLGALCV 324
            Q    R+L YS+++  G + L         +A G  H    +L +  I A   +   CV
Sbjct: 304 FQSDAKRLLAYSSVSQIGVMVLGLSLFSLDGVAGGLVH----MLNHALIKASLFMALGCV 359

Query: 325 SAALGRAPTLPDLHGLMKRRPLEAIALSLSLLSLAGLPAAGGFIAKLFLLRVLIDGSLWV 384
              +G +  + D+ G+ +R P    A  +  LSL G+P   GFI+K  L +  I    W+
Sbjct: 360 FLRIG-SVEIADMAGIGRRMPWTMAAFVIGGLSLIGIPGTAGFISKWQLAQSAIAEGWWL 418

Query: 385 LVGIVVAGSSLGFFYYAKFFTAPFVGHTHDES 416
            V  ++A S L   Y  K   A +   +  ES
Sbjct: 419 AVAALIASSLLAVVYVGKVIEAAYFRPSPAES 450