Pairwise Alignments

Query, 454 a.a., proton-conducting transporter membrane subunit from Rhodopseudomonas palustris CGA009

Subject, 1265 a.a., NADH dehydrogenase (quinone) (NCBI) from Rhodospirillum rubrum S1H

 Score =  136 bits (342), Expect = 5e-36
 Identities = 116/443 (26%), Positives = 202/443 (45%), Gaps = 42/443 (9%)

Query: 35  QASAAAGLAIAAA-LVLLRIGAPAAPMGALFTDDGPARFGIVFACL---VSLGALVFLRT 90
           QA A   +A+A A L L+     +  +G LF         ++FA +   V++ ++ +++ 
Sbjct: 252 QARAVGAIALATATLALVAARLESGDLGGLFA--------LIFAAIGLAVTVYSVGYMKH 303

Query: 91  GHPAKEAPSLLVLVAIGAATLAGAGHAATLFLGIEILSLSLIALFAFRLTRQGLEAAYKF 150
           GH        L L+      +A   H    +L  E+++     L     T + L+A  K+
Sbjct: 304 GHGVNRYFFFLFLMIGSLIGVATTNHLGNFYLFWELMTWMSYLLVIHEQTAKALKAGMKY 363

Query: 151 LVMSGLASSALLLGIALIFAETGALDFAGWGG-----RGALTAFGTALLLAGLAFKFSLV 205
            ++    +  +  GI ++ A+ G  + +           AL     A  L G   K  L 
Sbjct: 364 FLICASGAYVMHFGILVLHAQLGTFEISEIAPCIGTLSPALAGVVLATFLIGFMAKAGLF 423

Query: 206 PFHMWTPDAFEAAPAS-AATLAGVVSKSAVAIVILRL------------ALTAHLPEPVW 252
           P + W P+A   AP+S +  ++G+++K+ +  ++  L             L A L  P  
Sbjct: 424 PLYSWLPEAHPVAPSSISGPMSGILTKAGILGMVKLLFGIFGVGALGQFGLFAGLSLP-- 481

Query: 253 SQGLAALGGASVLIGNLLALRQPQLPRMLGYSTIAHSGYIALIIASGTPHAGEAVLFYLA 312
              L ALGG ++L+G + A RQ  + R+L YST+A  G I +++  GT  A    LF++ 
Sbjct: 482 GAVLVALGGITLLLGEVQAYRQTDIKRLLAYSTLAQIGEITMVLGVGTSLALAGGLFHVT 541

Query: 313 IYAPA------MLGALCVSAALGRAPTLPDLHGLMKRRPLEAIALSLSLLSLAGLPAAGG 366
            +A         +GAL + +A GR  +L DL GL K  P   + L + LL++ G+P  GG
Sbjct: 542 NHAVMKTMLFFAVGALILRSA-GR--SLDDLKGLGKVMPFTGLCLGIGLLAIMGVPPFGG 598

Query: 367 FIAKLFLLRVLIDGSLWVLVGIVVAGSSLGFFYYAKFFTAPFV-GHTHDESEPLPQLDRG 425
           F++K  ++   ++     +  +++ GS +G  YYA+   A F   +T  +    P   R 
Sbjct: 599 FVSKFLMIYACVEAGQVGVAAVILVGSVIGALYYARVLRAVFFEPYTGPKVVEAPLTMRI 658

Query: 426 LLIVCIALIVIFGVAPAGLMNVV 448
            L     ++V  GV P   ++VV
Sbjct: 659 ALGALAGVVVFTGVYPDAALSVV 681



 Score = 90.1 bits (222), Expect = 4e-22
 Identities = 122/495 (24%), Positives = 215/495 (43%), Gaps = 65/495 (13%)

Query: 7    AALSPL-----VVLAIAAVAAMMLVPLARLQIVQASAAAGLAIAAALVLLRIGAPAAPMG 61
            AAL PL     +   IA V A+++  L +   V A + +   +A AL  + I +    + 
Sbjct: 697  AALPPLRMEWSLAALIAVVGAVVVYILGKRSTVVAGSLSVAVMALALAGILIQSGRYDLL 756

Query: 62   ALFTDDGPARFGIVFACLVSLGALVFLRTGHPAKEAPSLLVLVAIGAATLAGAGHAATLF 121
            + +     A   +V   +  L ++ ++  GH         V++  G   +  +      F
Sbjct: 757  SFWF----AALIVVVGAINLLYSIGYMAHGHAQNRFFFFFVMMIGGLLGVTASDDLFNFF 812

Query: 122  LGIEILSL-SLIALFAFRLTRQGLEAAYKFLVMSGLASSALLLGIALIFAETGALDFA-- 178
               E++S  +L  +     T+  L+   K+ + + + +S L LG+A++ A+ G  + A  
Sbjct: 813  AFWEVMSSWTLYLVIIHEETKDSLDEGTKYFIFNFVGASFLFLGVAILAAKAGTFEMALL 872

Query: 179  ---------GWGGRGALTAFGTALLLAGLAFKFSLVPFHMWTPDAFEAAPASAAT-LAGV 228
                     GW       A    L+LAGL  K + +P  +     ++  PA A T ++G 
Sbjct: 873  PQAALSMPVGW------LAVSAGLILAGLLMKAAQLPLRI----DYQMHPAPAPTPVSGY 922

Query: 229  VS------------KSAVAIV----ILRLA-LTAHLPEP-VWSQGLAALGGASVLIGNLL 270
            +S            K  VA+     + R+A L A +P+P V  Q +AAL   +VL    +
Sbjct: 923  ISAVLLKVGPYGVLKIMVALGAGGGLARIAGLGAWMPDPLVVVQVIAAL---TVLYAGAM 979

Query: 271  ALRQPQLPRMLGYSTIAHSGYIALIIASGTP--HAGEAVLF--YLAIYAPAMLGALCVSA 326
            A+ Q  + R+L YST++  GY+ L ++ G+    AG  + F  ++ +     L A C+  
Sbjct: 980  AVVQNGVKRLLIYSTVSQLGYVLLGLSLGSALGVAGGLMHFVNHMMLKDILFLAAGCI-L 1038

Query: 327  ALGRAPTLPDLHGLMKRRPLEAIALSLSLLSLAGLPAAGGFIAKLFLLRVLIDGSLWVLV 386
            A     +L DL GL ++ P+       + LSL+G+P   GF +K  + +    G  ++L 
Sbjct: 1039 AQAHVHSLDDLGGLGRKMPITFGLFLFAGLSLSGIPPFNGFASKWLIYQGAFQGGHYLLA 1098

Query: 387  GIVVAGSSLGFFYYAKFFTAPFVG------HTHDESEPLPQLDRGLLIVCIALIVIF-GV 439
               +  S        KF  + F+G       T  E+ P+  +  GLL     ++ +F GV
Sbjct: 1099 MAALMSSLFTLAAVLKFTHSAFLGPLSPAAATMREAPPVMLIPMGLLAAGSVIVGVFPGV 1158

Query: 440  APAGLMNVVAATMAP 454
            A   +  + AA   P
Sbjct: 1159 ALVPISRIQAALGLP 1173



 Score = 67.4 bits (163), Expect = 3e-15
 Identities = 61/193 (31%), Positives = 86/193 (44%), Gaps = 14/193 (7%)

Query: 256 LAALGGASVLIGNLLALRQPQ-LPRMLGYSTIAHSGYIALIIASGTPHAGEAVLFYLAIY 314
           LA  G A +LIG  LALR  + L RML YSTIA  GY+ + +  GT       + +L   
Sbjct: 7   LAWAGAALMLIGEGLALRNVRDLARMLTYSTIAEIGYVLMGLGIGTAAGETGAVMHLGYQ 66

Query: 315 APAMLGALCVSAAL-----GRAPTLPDLHGLMKRRPLEAIALSLSLLSLAGLPAAGGFIA 369
           A  ++ AL V AA        +  L  L G ++R P  ++     L S+ GL    G  +
Sbjct: 67  A--IMRALVVVAAWHLIRRSGSSKLDALVGSVERMPFVSLMFGFGLFSVMGLSPFKGSFS 124

Query: 370 KLFLLRVLIDGSLWVLVGIVVAGSSLGFFYYAK-----FFTAPFVGHTHDESEPLPQLDR 424
           K  +L   I+   W L  +    S +  FYY        F     G   D+  P  Q+  
Sbjct: 125 KFVILYAAIENGYWGLAAVGTVASIIAAFYYIHTIQQVCFQRQSHGILGDKPIPFFQIPV 184

Query: 425 GLL-IVCIALIVI 436
           G L IV +AL+ +
Sbjct: 185 GQLPIVVLALVTV 197