Pairwise Alignments

Query, 1293 a.a., methionine synthase from Rhodopseudomonas palustris CGA009

Subject, 1246 a.a., B12-dependent methionine synthase (RefSeq) from Shewanella amazonensis SB2B

 Score = 1491 bits (3861), Expect = 0.0
 Identities = 761/1260 (60%), Positives = 946/1260 (75%), Gaps = 35/1260 (2%)

Query: 1    MTKPISAKRTQLLALAAQ---------RILVLDGAMGTMIQQLQLDEAAFRGERFKDFHR 51
            M  P+ ++ T+ LA + Q         RIL+LDGAMGTMIQ  +L+E  +RG RF D+H 
Sbjct: 1    MATPVLSQATKALAQSRQQRLNEDLSTRILILDGAMGTMIQGHKLEEEHYRGSRFADWHC 60

Query: 52   DLRGNNDLLILTQPQAIEDIHAQYLRAGADIVATNTFSSTSIAQADYEMSELAYEMSRDG 111
            D++GNNDLL+LTQP+ I+ IH +YL AGADI+ TNTF++T++A ADY+M  L+ E++  G
Sbjct: 61   DVKGNNDLLVLTQPEIIKGIHREYLLAGADIIETNTFNATTVAMADYDMQSLSAEINLVG 120

Query: 112  ARLARNAAAKVEAEDGKPRFVAGAIGPTNRTASISPDVANPGYRAVTFDDLRIAYSEQIN 171
            AR+AR  A +VEA+ G PR+VAG +GPTNRT SISPDV +PGYR + FDDL  AY E   
Sbjct: 121  ARIAREVADEVEAQTGIPRYVAGVLGPTNRTCSISPDVNDPGYRNIHFDDLVTAYRESTA 180

Query: 172  GLLDGGADILLLETIFDTLNAKAALYAIAEITEARGIDVPVMISGTITDKSGRLLSGQMP 231
             L++GGADI+++ETIFDTLNAKAAL+AI  I +  G+ +PVMISGTITD SGR L+GQ  
Sbjct: 181  ALIEGGADIIMVETIFDTLNAKAALFAIESIFDEVGLRLPVMISGTITDASGRTLTGQTT 240

Query: 232  EAFWNSVRHARPITIGFNCALGAKDLRAHIADISRVADTLVCAYPNAGLPNEFGQYDESP 291
            EAF+NS+RH +PI++G NCALG K+LR ++ ++SR+++  V A+PNAGLPNEFG YDE+P
Sbjct: 241  EAFYNSLRHIKPISMGLNCALGPKELRPYVEELSRISECYVSAHPNAGLPNEFGGYDETP 300

Query: 292  EYMASLVGEFAEAGLVNIVGGCCGTTPAHIKAIAEAVAPHKPRVIPTIDPRLRLSGLEPF 351
            + MA ++ ++A  G++NIVGGCCGTTP HI+ I EAV  H PR +P +    RL+GLEP 
Sbjct: 301  KEMADIIVQWAIEGMLNIVGGCCGTTPDHIRVIREAVEKHAPRKLPELPVACRLAGLEPL 360

Query: 352  ELTKDIPFVNVGERTNVTGSAKFRKLITAGDYAAALQVARDQVENGAQIIDVNMDEGLLD 411
             ++ D  FVNVGERTNVTGSAKF KLI  G Y  AL VARDQVENGAQIID+NMDEG+LD
Sbjct: 361  TISADSLFVNVGERTNVTGSAKFLKLIKEGQYETALDVARDQVENGAQIIDINMDEGMLD 420

Query: 412  SEAAMITFLNLVAAEPDIAKVPVMVDSSKFNVIEAGLKCLQGKPVVNSISLKEGEDKFLH 471
             E  M TFLNLVA+EP+I+KVP+M+DSSK+ VIEAGLKC+QGK +VNSISLKEGE KF+ 
Sbjct: 421  GEEVMTTFLNLVASEPEISKVPIMIDSSKWEVIEAGLKCVQGKCIVNSISLKEGEAKFIE 480

Query: 472  EARIARRHGAAVVVMAFDETGQADTYARKTEICARAYDILVNRVGFPPEDIIFDPNIFAI 531
            +A + +R+GAA ++MAFDETGQADT ARK EIC RAY ILV++VGFPPEDIIFDPNIFA+
Sbjct: 481  QATLVKRYGAAAIIMAFDETGQADTRARKIEICTRAYRILVDKVGFPPEDIIFDPNIFAV 540

Query: 532  ATGLEEHNNYGVDFIEATRWIRQNLPHAHISGGVSNLSFSFRGNEPVREAMHSVFLYHAI 591
            ATG+EEH+NY VDFIEA R I+  LPHA ISGGVSN+SFSFRGN PVREA+H+VFLYHAI
Sbjct: 541  ATGIEEHDNYAVDFIEAVRDIKATLPHAMISGGVSNVSFSFRGNNPVREAIHAVFLYHAI 600

Query: 592  KAGMDMGIVNAGQMIVYDDIDPELRQVCEDVILN-----RDPGASERLLALADKYRGQGK 646
            K GMDMGIVNAGQ+ +YDDI  EL++  E V+LN      D   +E+LL +A+KYRG G 
Sbjct: 601  KEGMDMGIVNAGQLAIYDDIPAELKERVEAVVLNLPCPVEDSTNTEQLLEIAEKYRGGGG 660

Query: 647  Q--QKEQDLAWRSWPVEQRLSHALVHGITEFIELDTEEARAKAERPLHVIEGPLMAGMNV 704
                K++DL WRS PV +RL HALV GITEFI+ DTEEAR +A RPL VIEGPLM GMNV
Sbjct: 661  SGAGKKEDLQWRSLPVNKRLEHALVKGITEFIDADTEEARQQATRPLDVIEGPLMDGMNV 720

Query: 705  VGDLFGDGKMFLPQVVKSARVMKQAVAYLMPFMEEEKARNLAAGTDTGERATAGKIVLAT 764
            VGDLFG+GKMFLPQVVKSARVMK+AVAYL PF+E EK     AG         GK+++ T
Sbjct: 721  VGDLFGEGKMFLPQVVKSARVMKKAVAYLNPFIEAEK----VAGQSN------GKVLMVT 770

Query: 765  VKGDVHDIGKNIVGIVLQCNNFEVIDLGVMVPAAKIIETAKAENADIVGLSGLITPSLDE 824
            VKGDVHDIGKNIVG+VL CN +EVIDLGVMVP  KI+E AK E  DI+G+SGLITPSLDE
Sbjct: 771  VKGDVHDIGKNIVGVVLACNGYEVIDLGVMVPVEKIVEVAKKEQVDIIGMSGLITPSLDE 830

Query: 825  MSFLAGELQRSGFNIPLLIGGATTSRVHTAVKIDPAYPSGSVVHVNDASRAVGVASSLLS 884
            M       +R G  +P +IGGAT S++HTAVKI P YP G+ +++ DASRAV + S L++
Sbjct: 831  MVHNVKTFEREGLTLPAIIGGATCSKIHTAVKIAPHYPHGA-IYIPDASRAVPMVSKLIN 889

Query: 885  KDRGAAYAAEVRADYAKISAAHHRAQADKKR---LTLAAARANATKIDWAATSPVKPSFI 941
            ++     AA ++A Y +      +  +  KR   +++ AAR N  ++DWA   P  P+ +
Sbjct: 890  EE---TRAATIKATYDEYDVMREKRLSQAKRKEIISIEAARENRCQLDWANYQPKVPNKL 946

Query: 942  GTRSFSGYSLAELAEYIDWTPFFQAWELAGRFPAILDDSVVGEAARSLYADARKMLDRIV 1001
            G + F  Y L +L + IDWTPFF+AWEL G FP IL+D VVGE AR L+ADA+ ML  I+
Sbjct: 947  GIQVFEDYPLDDLVDRIDWTPFFRAWELHGHFPRILEDEVVGEEARKLFADAKAMLQTII 1006

Query: 1002 TENWFTAKATIGFWPAN-ADGDDILVYADETRTTPIATLHTLRQQLDKREGRANAALSDF 1060
             E W TAK  IG +PAN  + DDI +Y DE+R+  + T H LR Q++ R G  N  LSDF
Sbjct: 1007 DEKWLTAKGVIGLFPANTVNHDDIELYTDESRSQVLMTTHHLRMQIE-RVGNDNFCLSDF 1065

Query: 1061 IAPVASSVADYIGGFVVTAGIGEDVIADKFKAERDDYSSIMVKALADRLAEAFAERMHAR 1120
            +AP  S V DY GGF V AG G D    +F+A  DDY++IM+K LADRLAEAFAERMH R
Sbjct: 1066 VAPKDSGVVDYTGGFAVCAGHGIDEHLARFEANHDDYNAIMLKVLADRLAEAFAERMHER 1125

Query: 1121 VRREFWGYAADENLSAEDLILEKYQGIRPAPGYPAQPDHTEKATLFELLDAEASAGVTLT 1180
            VR+EFWGYA+DENL  E LI EKY+GIRPAPGYPA PDHTEK  L++LL       + +T
Sbjct: 1126 VRKEFWGYASDENLDNEALIREKYRGIRPAPGYPACPDHTEKGLLWDLLKPNECIDLNIT 1185

Query: 1181 ESFAMWPGSSVSGLYFSHPQSAYFGVGKIERDQVEDYAARKGWDVATAERWLAPVLNYIP 1240
            ESFAM+P ++VSG YF+HP++ YFGV  I RDQVEDYA RKG  VA  E+WLAP+L+Y P
Sbjct: 1186 ESFAMYPTAAVSGWYFAHPEARYFGVTNIGRDQVEDYARRKGMTVAETEKWLAPILDYDP 1245