Pairwise Alignments

Query, 1293 a.a., methionine synthase from Rhodopseudomonas palustris CGA009

Subject, 1244 a.a., 5-methyltetrahydrofolate--homocysteine methyltransferase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1478 bits (3825), Expect = 0.0
 Identities = 751/1234 (60%), Positives = 925/1234 (74%), Gaps = 24/1234 (1%)

Query: 19   RILVLDGAMGTMIQQLQLDEAAFRGERFKDFHRDLRGNNDLLILTQPQAIEDIHAQYLRA 78
            RIL+LDGAMGTMIQ  +L+EA +RGERFKD+H D++GNNDLL+LTQP  I+ IH  YL A
Sbjct: 22   RILILDGAMGTMIQGYKLEEADYRGERFKDWHTDVKGNNDLLVLTQPHIIKQIHTDYLLA 81

Query: 79   GADIVATNTFSSTSIAQADYEMSELAYEMSRDGARLARNAAAKVEAEDGKPRFVAGAIGP 138
            GADI+ TNTF++T+IA ADY+M  L+ E++R+GARLAR A   +E   GKPR+VAG +GP
Sbjct: 82   GADIIETNTFNATTIAMADYDMQSLSAEINREGARLAREACDAIEQATGKPRYVAGVLGP 141

Query: 139  TNRTASISPDVANPGYRAVTFDDLRIAYSEQINGLLDGGADILLLETIFDTLNAKAALYA 198
            TNRT SISPDV +PG+R + FD+L  AY E    L++GGADI+++ETIFDTLNAKAAL+A
Sbjct: 142  TNRTCSISPDVNDPGFRNIHFDELVTAYCESTRALIEGGADIIMVETIFDTLNAKAALFA 201

Query: 199  IAEI-TEARGID----VPVMISGTITDKSGRLLSGQMPEAFWNSVRHARPITIGFNCALG 253
            I  +  E  G +    +PVMISGTITD SGR L+GQ  EAF+NS+RH +P++IG NCALG
Sbjct: 202  IETVFDELFGANSPARLPVMISGTITDASGRTLTGQTTEAFYNSLRHIKPLSIGLNCALG 261

Query: 254  AKDLRAHIADISRVADTLVCAYPNAGLPNEFGQYDESPEYMASLVGEFAEAGLVNIVGGC 313
             K+LR ++ ++SR+A+  V A+PNAGLPNEFG YDE+PE MA ++ E+A  G++NI+GGC
Sbjct: 262  PKELRPYVEELSRIAECYVSAHPNAGLPNEFGGYDETPEDMAKVIQEWAREGMLNIIGGC 321

Query: 314  CGTTPAHIKAIAEAVAPHKPRVIPTIDPRLRLSGLEPFELTKDIPFVNVGERTNVTGSAK 373
            CG+TP HIK I EAV    PRV+P I    RL+GLEP  +     FVNVGERTNVTGSAK
Sbjct: 322  CGSTPEHIKVIREAVEQFAPRVLPEIPVACRLAGLEPLTIDAQTLFVNVGERTNVTGSAK 381

Query: 374  FRKLITAGDYAAALQVARDQVENGAQIIDVNMDEGLLDSEAAMITFLNLVAAEPDIAKVP 433
            F KLI  G +  AL VAR+QVE+GAQIID+NMDEG+LD    M  FLNL+A+EPDI++VP
Sbjct: 382  FLKLIKEGKFEQALDVAREQVESGAQIIDINMDEGMLDGVEIMHKFLNLIASEPDISRVP 441

Query: 434  VMVDSSKFNVIEAGLKCLQGKPVVNSISLKEGEDKFLHEARIARRHGAAVVVMAFDETGQ 493
            +M+DSSK+ VIEAGLKC+QGK +VNSISLKEGE+KF+ +A + +R+GAA ++MAFDE GQ
Sbjct: 442  IMIDSSKWEVIEAGLKCIQGKGIVNSISLKEGEEKFIEQATLVKRYGAAAIIMAFDEQGQ 501

Query: 494  ADTYARKTEICARAYDILVNRVGFPPEDIIFDPNIFAIATGLEEHNNYGVDFIEATRWIR 553
            ADT ARK EIC RAY +LV++VGFPPEDIIFDPNIFAIATG++EH+NY VDFI+A + I+
Sbjct: 502  ADTKARKVEICTRAYRVLVDKVGFPPEDIIFDPNIFAIATGIDEHDNYAVDFIDAIKEIK 561

Query: 554  QNLPHAHISGGVSNLSFSFRGNEPVREAMHSVFLYHAIKAGMDMGIVNAGQMIVYDDIDP 613
              LPHA ISGGVSN+SFSFRGN PVREA+H+VFLYHAIK GMDMGIVNAGQ+ ++DDIDP
Sbjct: 562  ATLPHAMISGGVSNVSFSFRGNNPVREAIHAVFLYHAIKVGMDMGIVNAGQLAIFDDIDP 621

Query: 614  ELRQVCEDVILN-----RDPGASERLLALADKYRGQGKQQ-KEQDLAWRSWPVEQRLSHA 667
            EL+   E+V+LN          +E+LL +A+K+RG G    K++DL WRSWPV QRL+HA
Sbjct: 622  ELKVRVENVVLNLPCPVEGSNNTEQLLEIAEKFRGDGSSSAKKEDLEWRSWPVNQRLAHA 681

Query: 668  LVHGITEFIELDTEEARAKAERPLHVIEGPLMAGMNVVGDLFGDGKMFLPQVVKSARVMK 727
            LV GITEFI+ DTE AR  A RPL VIEGPLM GMN+VGDLFG GKMFLPQVVKSARVMK
Sbjct: 682  LVKGITEFIDEDTEAARQAASRPLDVIEGPLMDGMNIVGDLFGSGKMFLPQVVKSARVMK 741

Query: 728  QAVAYLMPFMEEEKARNLAAGTDTGERATAGKIVLATVKGDVHDIGKNIVGIVLQCNNFE 787
            +AVAYL PF+E+EK     AG         GKI++ TVK DVHDIGKNIVG+VL CN FE
Sbjct: 742  KAVAYLNPFIEKEK----VAGQSN------GKILMVTVKSDVHDIGKNIVGVVLACNGFE 791

Query: 788  VIDLGVMVPAAKIIETAKAENADIVGLSGLITPSLDEMSFLAGELQRSGFNIPLLIGGAT 847
            V DLGVMV   +I+E  K  N DI+G+SGLITPSLDEM        R G  IP +IGGAT
Sbjct: 792  VFDLGVMVSVERILEAVKEHNIDIIGMSGLITPSLDEMVHNVKTFHREGLTIPAIIGGAT 851

Query: 848  TSRVHTAVKIDPAYPSGSVVHVNDASRAVGVASSLLSKDRGAAYAAEVRADYAKISAAHH 907
             S++HTAVKI P YP G+ +++ DASRAV + S L++ +   A   E  A+Y  +     
Sbjct: 852  CSKIHTAVKIAPHYPHGA-IYIADASRAVPMVSKLVNNETRQATIDETYAEYDDMRTKRL 910

Query: 908  RAQADKKRLTLAAARANATKIDWAATSPVKPSFIGTRSFSGYSLAELAEYIDWTPFFQAW 967
                 K+ ++L AAR N  + DWA  SP KP+ +G + F  Y L +L + IDWTPFF+AW
Sbjct: 911  SQAKRKEIVSLEAARENRCQHDWANYSPFKPNVLGRQVFDDYPLTDLVDRIDWTPFFRAW 970

Query: 968  ELAGRFPAILDDSVVGEAARSLYADARKMLDRIVTENWFTAKATIGFWPANADG-DDILV 1026
            EL G +P IL D VVG  A+ L++D + ML +I+ E W TAK  IG +PAN  G DDI +
Sbjct: 971  ELHGHYPEILSDKVVGVEAQKLFSDGKAMLKKIIEEKWLTAKGVIGLFPANTVGFDDIEL 1030

Query: 1027 YADETRTTPIATLHTLRQQLDKREGRANAALSDFIAPVASSVADYIGGFVVTAGIGEDVI 1086
            Y DETRT    T H LR QL+ R G  N  L+DF+AP  S VADY+GGF VTAG G D  
Sbjct: 1031 YTDETRTEVELTTHHLRMQLE-RVGNDNFCLADFVAPKDSGVADYMGGFAVTAGHGIDEH 1089

Query: 1087 ADKFKAERDDYSSIMVKALADRLAEAFAERMHARVRREFWGYAADENLSAEDLILEKYQG 1146
              +F+A  DDY++IM+K LADRLAEAFAERMH RVR+EFWGYAADE L  E LI EKY+G
Sbjct: 1090 VARFEANHDDYNAIMLKCLADRLAEAFAERMHERVRKEFWGYAADEQLDNEALIREKYKG 1149

Query: 1147 IRPAPGYPAQPDHTEKATLFELLDAEASAGVTLTESFAMWPGSSVSGLYFSHPQSAYFGV 1206
            IRPAPGYPA PDHTEK  L+ELL    +  + +TES+AM+P ++VSG YF+HP+S YFGV
Sbjct: 1150 IRPAPGYPACPDHTEKGLLWELLKPNETIDLNITESYAMFPTAAVSGWYFAHPKSRYFGV 1209

Query: 1207 GKIERDQVEDYAARKGWDVATAERWLAPVLNYIP 1240
              I RDQVEDYA RKG  VA  E+WLAPVL+Y P
Sbjct: 1210 SNIGRDQVEDYAKRKGMTVAETEKWLAPVLDYDP 1243