Pairwise Alignments

Query, 1293 a.a., methionine synthase from Rhodopseudomonas palustris CGA009

Subject, 1244 a.a., B12-dependent methionine synthase (RefSeq) from Shewanella sp. ANA-3

 Score = 1493 bits (3865), Expect = 0.0
 Identities = 754/1236 (61%), Positives = 931/1236 (75%), Gaps = 24/1236 (1%)

Query: 17   AQRILVLDGAMGTMIQQLQLDEAAFRGERFKDFHRDLRGNNDLLILTQPQAIEDIHAQYL 76
            ++RIL+LDGAMGTMIQ  +L+E  +RGERFKD+H D++GNNDLL+LTQP  I+ IH  YL
Sbjct: 20   SKRILILDGAMGTMIQGYKLEEEDYRGERFKDWHTDVKGNNDLLVLTQPHIIKQIHIDYL 79

Query: 77   RAGADIVATNTFSSTSIAQADYEMSELAYEMSRDGARLARNAAAKVEAEDGKPRFVAGAI 136
            +AGADI+ TNTF++T+IA ADY+M  L+ E++R+GARLAR A  ++E   GKPR+VAG +
Sbjct: 80   KAGADIIETNTFNATTIAMADYDMQSLSAEINREGARLAREACDEIEQATGKPRYVAGVL 139

Query: 137  GPTNRTASISPDVANPGYRAVTFDDLRIAYSEQINGLLDGGADILLLETIFDTLNAKAAL 196
            GPTNRT SISPDV +PGYR + FD+L  AY E    L++GGADI+++ETIFDTLNAKAAL
Sbjct: 140  GPTNRTCSISPDVNDPGYRNIHFDELVTAYCESTRALIEGGADIIMVETIFDTLNAKAAL 199

Query: 197  YAIAEITEA-----RGIDVPVMISGTITDKSGRLLSGQMPEAFWNSVRHARPITIGFNCA 251
            +AI  + +          +PVMISGTITD SGR L+GQ  EAF+NS+RH +P++IG NCA
Sbjct: 200  FAIETVFDELFGPNSPARLPVMISGTITDASGRTLTGQTTEAFYNSLRHIKPLSIGLNCA 259

Query: 252  LGAKDLRAHIADISRVADTLVCAYPNAGLPNEFGQYDESPEYMASLVGEFAEAGLVNIVG 311
            LG K+LR ++ ++SR+A+  V A+PNAGLPNEFG YDE+PE MAS++ E+A  G++NI+G
Sbjct: 260  LGPKELRPYVEELSRIAECYVSAHPNAGLPNEFGGYDETPEDMASVIQEWAREGMLNIIG 319

Query: 312  GCCGTTPAHIKAIAEAVAPHKPRVIPTIDPRLRLSGLEPFELTKDIPFVNVGERTNVTGS 371
            GCCG+TP HIK I EAV P  PRV+P I    RLSGLEP  +     FVNVGERTNVTGS
Sbjct: 320  GCCGSTPEHIKVIREAVEPFAPRVLPEIPVACRLSGLEPLTIDAQTLFVNVGERTNVTGS 379

Query: 372  AKFRKLITAGDYAAALQVARDQVENGAQIIDVNMDEGLLDSEAAMITFLNLVAAEPDIAK 431
            AKF KLI  G +  AL VAR+QVE+GAQIID+NMDEG+LD    M  FLNL+A+EPDI++
Sbjct: 380  AKFLKLIKEGKFEQALDVAREQVESGAQIIDINMDEGMLDGVEVMHKFLNLIASEPDISR 439

Query: 432  VPVMVDSSKFNVIEAGLKCLQGKPVVNSISLKEGEDKFLHEARIARRHGAAVVVMAFDET 491
            VP+M+DSSK+ VIEAGLKC+QGK +VNSISLKEGE+KF+ +A + +R+GAA ++MAFDE 
Sbjct: 440  VPIMIDSSKWEVIEAGLKCIQGKGIVNSISLKEGEEKFIEQATLVKRYGAAAIIMAFDEQ 499

Query: 492  GQADTYARKTEICARAYDILVNRVGFPPEDIIFDPNIFAIATGLEEHNNYGVDFIEATRW 551
            GQADT ARK EIC RAY +LV++VGFPPEDIIFDPNIFAIATG++EH+NY VDFIEA + 
Sbjct: 500  GQADTKARKVEICTRAYRVLVDKVGFPPEDIIFDPNIFAIATGIDEHDNYAVDFIEAIKE 559

Query: 552  IRQNLPHAHISGGVSNLSFSFRGNEPVREAMHSVFLYHAIKAGMDMGIVNAGQMIVYDDI 611
            I+  LPHA ISGGVSN+SFSFRGN PVREA+H+VFLYHAIK GMDMGIVNAGQ+ +YDDI
Sbjct: 560  IKATLPHAMISGGVSNVSFSFRGNNPVREAIHAVFLYHAIKVGMDMGIVNAGQLAIYDDI 619

Query: 612  DPELRQVCEDVILN-----RDPGASERLLALADKYRGQGKQQ-KEQDLAWRSWPVEQRLS 665
            DPEL+   E+V+LN      D   +E+LL +A+K+RG G    K++DL WRSWPV QRL+
Sbjct: 620  DPELKDKVENVVLNLHCPVEDSNNTEQLLEIAEKFRGDGSSSAKKEDLEWRSWPVNQRLA 679

Query: 666  HALVHGITEFIELDTEEARAKAERPLHVIEGPLMAGMNVVGDLFGDGKMFLPQVVKSARV 725
            HALV GITEFI+ DTE AR  A RPL VIEGPLM GMN+VGDLFG GKMFLPQVVKSARV
Sbjct: 680  HALVKGITEFIDEDTEAARQLASRPLDVIEGPLMDGMNIVGDLFGSGKMFLPQVVKSARV 739

Query: 726  MKQAVAYLMPFMEEEKARNLAAGTDTGERATAGKIVLATVKGDVHDIGKNIVGIVLQCNN 785
            MK+AVAYL PF+E+EK           E  + G+I++ TVKGDVHDIGKNIVG+VL CN 
Sbjct: 740  MKKAVAYLNPFIEQEKV----------EGQSNGRILMVTVKGDVHDIGKNIVGVVLACNG 789

Query: 786  FEVIDLGVMVPAAKIIETAKAENADIVGLSGLITPSLDEMSFLAGELQRSGFNIPLLIGG 845
            FEV DLGVMV   +I+E  K  N DI+G+SGLITPSLDEM        R G  IP +IGG
Sbjct: 790  FEVFDLGVMVSVERILEAVKEHNIDIIGMSGLITPSLDEMVHNVKTFHREGLTIPAIIGG 849

Query: 846  ATTSRVHTAVKIDPAYPSGSVVHVNDASRAVGVASSLLSKDRGAAYAAEVRADYAKISAA 905
            AT S++HTAVKI P YP G+ +++ DASRAV + S L+S +   A   E  A+Y ++   
Sbjct: 850  ATCSKIHTAVKIAPHYPHGA-IYIADASRAVPMVSKLVSNETRQATIDETYAEYEEMRIK 908

Query: 906  HHRAQADKKRLTLAAARANATKIDWAATSPVKPSFIGTRSFSGYSLAELAEYIDWTPFFQ 965
                   K+ ++L AAR N  + DWA  +P KP+ +G + F  Y L +L + IDWTPFF+
Sbjct: 909  RLSQTKRKEIVSLEAARENRCQHDWANYTPFKPNVLGRQVFDDYPLTDLVDRIDWTPFFR 968

Query: 966  AWELAGRFPAILDDSVVGEAARSLYADARKMLDRIVTENWFTAKATIGFWPANADG-DDI 1024
            AWEL G +P IL D VVG  A+ L+AD + ML +I+ E W TAK  IG +PAN  G DDI
Sbjct: 969  AWELHGHYPEILTDKVVGVEAQKLFADGQAMLKKIIDEKWLTAKGVIGLFPANTVGFDDI 1028

Query: 1025 LVYADETRTTPIATLHTLRQQLDKREGRANAALSDFIAPVASSVADYIGGFVVTAGIGED 1084
             +Y DETRT    T H LR QL+ R G  N  L+DF+AP  S VADY+GGF VTAG G D
Sbjct: 1029 ELYTDETRTEVEMTTHHLRMQLE-RVGNDNFCLADFVAPKDSGVADYMGGFAVTAGHGID 1087

Query: 1085 VIADKFKAERDDYSSIMVKALADRLAEAFAERMHARVRREFWGYAADENLSAEDLILEKY 1144
                +F+A  DDY++IM+K LADRLAEAFAERMH RVR+EFWGYAADE L  E LI EKY
Sbjct: 1088 EHIARFEANHDDYNAIMLKCLADRLAEAFAERMHERVRKEFWGYAADEQLDNEALIREKY 1147

Query: 1145 QGIRPAPGYPAQPDHTEKATLFELLDAEASAGVTLTESFAMWPGSSVSGLYFSHPQSAYF 1204
            +GIRPAPGYPA PDHTEK  L++LL    +  + +TES+AM+P ++VSG YF+HP+S YF
Sbjct: 1148 KGIRPAPGYPACPDHTEKGLLWDLLKPNETIDLNITESYAMFPTAAVSGWYFAHPKSRYF 1207

Query: 1205 GVGKIERDQVEDYAARKGWDVATAERWLAPVLNYIP 1240
            GV  I RDQVEDYA RKG  VA  E+WLAPVL+Y P
Sbjct: 1208 GVTNIGRDQVEDYAKRKGMTVAETEKWLAPVLDYDP 1243