Pairwise Alignments

Query, 319 a.a., IS110 family transposase from Rhodopseudomonas palustris CGA009

Subject, 311 a.a., transposase, IS116/IS110/IS902 family from Caulobacter crescentus NA1000

 Score =  164 bits (414), Expect = 3e-45
 Identities = 105/297 (35%), Positives = 152/297 (51%)

Query: 8   AVAAGVDAGQRFLDVALAPSGQTFRMPNLAEGIAEIIARLERSGVRRVVLEAIGPYAEPL 67
           ++  GVD   + LD  ++ SG    +    EGIA++        V  VV+EA G Y +  
Sbjct: 3   SIICGVDVSLKTLDGWISGSGLELSVSRSPEGIAKLARFCAEHDVELVVMEATGGYEKLP 62

Query: 68  VKALSVAGFEVGIVNPRRIKAFREAEGSRAKTDRLDARLIARFALTMPETLRPLPTDTQL 127
              L  AG    I N R ++ F EA G   KTDR+DAR+IA +A T   T +   +  Q 
Sbjct: 63  FGLLWAAGVPCAIANARSVRRFAEAMGVLEKTDRIDARIIADYAATKGLTSQAPESQIQE 122

Query: 128 ELKALSLRRRQLTEMIAMEKTRMKQVRGTLLLDSHRAAIAALSAQCQAIEAELAKRIGDD 187
            L+AL  R RQLT++   +  + + V    ++ S    +A ++ Q +A+E ++A  +G D
Sbjct: 123 RLRALVARLRQLTQLKVAQSNQRRLVDEPQVVASFDEMLALIARQSRALEIQIADLLGAD 182

Query: 188 AELRRVLHILKSIPGIGERVATLLITDLPELGQRDRKAIASLAGLAPHVSQSGAAPPRAA 247
              R +   L+ I G+  R    L+ ++PE+G    KA+A LAGLAP    SG    +  
Sbjct: 183 PLWRALDAALREIKGVAGRTVARLMAEMPEIGTVSNKAVAKLAGLAPIARDSGLRKGKRP 242

Query: 248 IAGGRPCVRAALYMAALVAARHHPKLRDDYNALRLQGKPGKVALIAIARKLLVTANA 304
           I GGR  VR+ L + A V ARH P L   +  L   GKP     +A+ARKLLV  NA
Sbjct: 243 IRGGRANVRSILVVVASVVARHDPDLAAFHQRLTQAGKPKMAVRVAVARKLLVRLNA 299