Pairwise Alignments

Query, 339 a.a., DNA-directed RNA polymerase subunit alpha from Rhodopseudomonas palustris CGA009

Subject, 333 a.a., DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type from Pseudomonas stutzeri RCH2

 Score =  284 bits (726), Expect = 3e-81
 Identities = 154/329 (46%), Positives = 213/329 (64%), Gaps = 7/329 (2%)

Query: 3   IQKNWQELIRPNKLQVTPGSDATRFATLVAEPLERGFGQTLGNALRRVLLSSLQGAAVQS 62
           +Q +  E + P  + V   S      TL  EPLERGFG TLGNALRR+LLSS+ G AV  
Sbjct: 1   MQSSVNEFLTPRHIDVQVVSPTRAKITL--EPLERGFGHTLGNALRRILLSSMPGCAVVE 58

Query: 63  VHIDGVLHEFSSIAGVREDVTDIVLNIKDISLKMQGEGPKRMVVKKQGPGAVTAGDIQTV 122
             IDGVLHE+S+I GV+EDV +I+LN+K I++K+ G     + + K+G GAVTA DIQ  
Sbjct: 59  AEIDGVLHEYSAIEGVQEDVIEILLNLKGIAIKLHGRDEVTLSLVKKGAGAVTAADIQLD 118

Query: 123 GDIVVLNPDLQLCTLDDGAEIRMEFTVNTGKGYV---AAERNRPEDAPIGLIPVDSLYSP 179
            D+ ++N D  +  L     + M+  V  G+GY    A + +  E   IG + +D+ +SP
Sbjct: 119 HDVEIVNGDHLIANLAANGSLNMKLKVARGRGYEPADARQSDEDESRSIGRLQLDATFSP 178

Query: 180 VRKVSYKVENTREGQILDYDKLTMTVETNGAISPEDAVAFAARILQDQLNVFVNFEEPRK 239
           VR+V+Y VEN R  Q  + DKL + +ETNG + PE+A+  AA ILQ QL  FV+ +   +
Sbjct: 179 VRRVAYVVENARVEQRTNLDKLVIDLETNGTLDPEEAIRRAATILQQQLAAFVDLKGDSE 238

Query: 240 EVTQEIIPDLAFNPAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPNFGR 299
            V  E   ++  +P  L+ VD+LEL+VRSANCLK +NI YIGDL+Q++E E+L+TPN G+
Sbjct: 239 PVVIEQEDEI--DPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGK 296

Query: 300 KSLNEIKEVLAQMGLHLGMEVPGWPPENI 328
           KSL EIK+VLA  GL LGM +  WPP ++
Sbjct: 297 KSLTEIKDVLASRGLSLGMRLDNWPPASL 325