Pairwise Alignments

Query, 339 a.a., DNA-directed RNA polymerase subunit alpha from Rhodopseudomonas palustris CGA009

Subject, 336 a.a., DNA-directed RNA polymerase subunit alpha from Sinorhizobium meliloti 1021

 Score =  543 bits (1400), Expect = e-159
 Identities = 270/337 (80%), Positives = 305/337 (90%), Gaps = 2/337 (0%)

Query: 3   IQKNWQELIRPNKLQVTPGSDATRFATLVAEPLERGFGQTLGNALRRVLLSSLQGAAVQS 62
           IQKNWQELI+PNK++    S     ATLVAEPLERGFG TLGNALRRVLLSSL+GAAV +
Sbjct: 2   IQKNWQELIKPNKVEFA--SSGRTKATLVAEPLERGFGLTLGNALRRVLLSSLRGAAVTA 59

Query: 63  VHIDGVLHEFSSIAGVREDVTDIVLNIKDISLKMQGEGPKRMVVKKQGPGAVTAGDIQTV 122
           V IDGVLHEFSSI GVREDVTDIVLNIK+I++KM G+  KRMVV+KQGPG VTAGDIQTV
Sbjct: 60  VQIDGVLHEFSSIPGVREDVTDIVLNIKEIAIKMDGDDAKRMVVRKQGPGVVTAGDIQTV 119

Query: 123 GDIVVLNPDLQLCTLDDGAEIRMEFTVNTGKGYVAAERNRPEDAPIGLIPVDSLYSPVRK 182
           GDI +LNP+  +CTLD+GAEIRMEFTVN GKGYV A+RNR EDAPIGLIPVDSLYSPV+K
Sbjct: 120 GDIEILNPNHVICTLDEGAEIRMEFTVNNGKGYVPADRNRSEDAPIGLIPVDSLYSPVKK 179

Query: 183 VSYKVENTREGQILDYDKLTMTVETNGAISPEDAVAFAARILQDQLNVFVNFEEPRKEVT 242
           VSYKVENTREGQ+LDYDKLTM++ET+G+++ EDA+AFAARILQDQL+VFVNF+EP+KE  
Sbjct: 180 VSYKVENTREGQVLDYDKLTMSIETDGSVTGEDAIAFAARILQDQLSVFVNFDEPQKETE 239

Query: 243 QEIIPDLAFNPAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPNFGRKSL 302
           +E + +LAFNPA LKKVDELELSVRSANCLKNDNIVYIGDL+QK+EAEMLRTPNFGRKSL
Sbjct: 240 EEAVTELAFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSL 299

Query: 303 NEIKEVLAQMGLHLGMEVPGWPPENIDELAKRFEDHY 339
           NEIKEVLA MGLHLGMEVP WPPENI++LAKR+ED Y
Sbjct: 300 NEIKEVLASMGLHLGMEVPSWPPENIEDLAKRYEDQY 336