Pairwise Alignments

Query, 339 a.a., DNA-directed RNA polymerase subunit alpha from Rhodopseudomonas palustris CGA009

Subject, 340 a.a., DNA-directed RNA polymerase, alpha subunit (NCBI) from Rhodospirillum rubrum S1H

 Score =  479 bits (1233), Expect = e-140
 Identities = 234/337 (69%), Positives = 280/337 (83%)

Query: 3   IQKNWQELIRPNKLQVTPGSDATRFATLVAEPLERGFGQTLGNALRRVLLSSLQGAAVQS 62
           IQKNWQELI+PNKL +     + + AT+VAEPLERGFG TLGNALRRVLLSSLQGAAV +
Sbjct: 4   IQKNWQELIKPNKLMIELVGGSKKVATVVAEPLERGFGLTLGNALRRVLLSSLQGAAVTA 63

Query: 63  VHIDGVLHEFSSIAGVREDVTDIVLNIKDISLKMQGEGPKRMVVKKQGPGAVTAGDIQTV 122
           + I+GVLHEFSSI GVREDVTD++LNIK ++L M  EGP+RM +K  GPG VTA  I+  
Sbjct: 64  IQIEGVLHEFSSIPGVREDVTDVILNIKGLALLMHSEGPRRMTLKASGPGEVTAAQIEMG 123

Query: 123 GDIVVLNPDLQLCTLDDGAEIRMEFTVNTGKGYVAAERNRPEDAPIGLIPVDSLYSPVRK 182
            DI ++NPDL +C LD+GA + MEFTV  GKGYV + +NRPEDAPIG IP+DS++SPV K
Sbjct: 124 SDIEIMNPDLVICHLDEGATLSMEFTVGMGKGYVPSTQNRPEDAPIGYIPIDSIFSPVTK 183

Query: 183 VSYKVENTREGQILDYDKLTMTVETNGAISPEDAVAFAARILQDQLNVFVNFEEPRKEVT 242
           VSY+VEN+R GQ+ DYDKL+M VET+G++ PEDAVA AARILQDQL +F+NFEEP+    
Sbjct: 184 VSYRVENSRVGQVTDYDKLSMVVETDGSVGPEDAVALAARILQDQLQLFINFEEPQAVSE 243

Query: 243 QEIIPDLAFNPAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPNFGRKSL 302
           ++   +L FN   L+KVDELELSVRSANCLKNDNI+YIGDLVQK+EAEMLRTPNFGRKSL
Sbjct: 244 EKKDDELPFNKNLLRKVDELELSVRSANCLKNDNIIYIGDLVQKTEAEMLRTPNFGRKSL 303

Query: 303 NEIKEVLAQMGLHLGMEVPGWPPENIDELAKRFEDHY 339
           NEIKEVLAQMGLHLGME+  WPPENI++LAK+ E+ Y
Sbjct: 304 NEIKEVLAQMGLHLGMEISNWPPENIEDLAKKLEEPY 340