Pairwise Alignments

Query, 339 a.a., DNA-directed RNA polymerase subunit alpha from Rhodopseudomonas palustris CGA009

Subject, 347 a.a., Probable DNA-directed RNA polymerase (alpha chain) RpoA (transcriptase alpha chain) (RNA polymerase alpha subunit) (DNA-directed RNA nucleotidyltransferase) from Mycobacterium tuberculosis H37Rv

 Score =  261 bits (666), Expect = 2e-74
 Identities = 139/301 (46%), Positives = 197/301 (65%), Gaps = 5/301 (1%)

Query: 31  VAEPLERGFGQTLGNALRRVLLSSLQGAAVQSVHIDGVLHEFSSIAGVREDVTDIVLNIK 90
           V EPLE GFG TLGN+LRR LLSS+ GAAV S+ IDGVLHEF+++ GV+EDVT+I+LN+K
Sbjct: 22  VIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVLHEFTTVPGVKEDVTEIILNLK 81

Query: 91  DISLKMQGEGPKRMVVKKQGPGAVTAGDIQTVGDIVVLNPDLQLCTLDDGAEIRMEFTVN 150
            + +  + + P  M ++KQGPG VTAGDI     + V NP + + TL+D  ++ +E  V 
Sbjct: 82  SLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHNPGMHIATLNDKGKLEVELVVE 141

Query: 151 TGKGYVAAERNRPEDAPIGLIPVDSLYSPVRKVSYKVENTREGQILDYDKLTMTVETNGA 210
            G+GYV A +NR   A IG IPVDS+YSPV KV+YKV+ TR  Q  D+DKL + VET  +
Sbjct: 142 RGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDATRVEQRTDFDKLILDVETKNS 201

Query: 211 ISPEDAVAFAARILQDQLNVFVNFEEPRKEVTQEIIPDLA---FNPAFLKKVDELELSVR 267
           ISP DA+A A + L +   +        + +  EI P  A      +F   +D+L+L+VR
Sbjct: 202 ISPRDALASAGKTLVELFGLARELNVEAEGI--EIGPSPAEADHIASFALPIDDLDLTVR 259

Query: 268 SANCLKNDNIVYIGDLVQKSEAEMLRTPNFGRKSLNEIKEVLAQMGLHLGMEVPGWPPEN 327
           S NCLK + +  +G+LV ++E+++L   NFG+KS++E+K  L Q+GL L    P + P  
Sbjct: 260 SYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIKLHQLGLSLKDSPPSFDPSE 319

Query: 328 I 328
           +
Sbjct: 320 V 320