Pairwise Alignments

Query, 339 a.a., DNA-directed RNA polymerase subunit alpha from Rhodopseudomonas palustris CGA009

Subject, 338 a.a., DNA-directed RNA polymerase alpha chain from Caulobacter crescentus NA1000

 Score =  510 bits (1314), Expect = e-149
 Identities = 249/335 (74%), Positives = 289/335 (86%)

Query: 3   IQKNWQELIRPNKLQVTPGSDATRFATLVAEPLERGFGQTLGNALRRVLLSSLQGAAVQS 62
           I++NW ELIRP K Q+  G+DATR A +VAEPLERGFG TLGNALRRVLLSSLQGAAV +
Sbjct: 2   IERNWNELIRPEKPQIETGADATRKARIVAEPLERGFGVTLGNALRRVLLSSLQGAAVTA 61

Query: 63  VHIDGVLHEFSSIAGVREDVTDIVLNIKDISLKMQGEGPKRMVVKKQGPGAVTAGDIQTV 122
           + IDGV+HEFSS+ GVREDV DIVLNIK ++++M  EGPKRM ++  GPG VTAG I+T 
Sbjct: 62  IQIDGVVHEFSSLEGVREDVVDIVLNIKQLAVRMHAEGPKRMTLRATGPGPVTAGQIETP 121

Query: 123 GDIVVLNPDLQLCTLDDGAEIRMEFTVNTGKGYVAAERNRPEDAPIGLIPVDSLYSPVRK 182
            DI +LNPD  LCTLDDGA +RMEFTVN GKGYV A+RNRPEDAPIGLI VD+LYSPV++
Sbjct: 122 ADIEILNPDHVLCTLDDGASVRMEFTVNNGKGYVPADRNRPEDAPIGLIAVDALYSPVKR 181

Query: 183 VSYKVENTREGQILDYDKLTMTVETNGAISPEDAVAFAARILQDQLNVFVNFEEPRKEVT 242
           V+Y+VE TR+GQ LDYDKL + VETNGA++P DAVA+AARILQDQL +F+ FEEP+ +  
Sbjct: 182 VAYRVEPTRQGQSLDYDKLILEVETNGAVTPVDAVAYAARILQDQLQIFITFEEPKAKSA 241

Query: 243 QEIIPDLAFNPAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPNFGRKSL 302
            E  P+L FNPA LKKVDELELSVRSANCLKNDNIVYIGDL+QK+EAEMLRTPNFGRKSL
Sbjct: 242 DESKPELPFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSL 301

Query: 303 NEIKEVLAQMGLHLGMEVPGWPPENIDELAKRFED 337
           NEIKEVLA MGLHLGM+VP WPPENI++LAK+FED
Sbjct: 302 NEIKEVLAGMGLHLGMDVPNWPPENIEDLAKKFED 336