Pairwise Alignments

Query, 1043 a.a., efflux RND transporter permease subunit from Rhodopseudomonas palustris CGA009

Subject, 1023 a.a., multidrug efflux RND transporter permease subunit MdtC from Pantoea sp. MT58

 Score =  951 bits (2459), Expect = 0.0
 Identities = 506/1015 (49%), Positives = 694/1015 (68%), Gaps = 9/1015 (0%)

Query: 7    FIRRPIATSLLGVALMIGGLLGYLALPVSALPQVDFPTVQVSTQLPGASPDVVASLITAP 66
            FI RP+AT+LL +A+ + G+LG+  LPV+ LPQVDFP + +S  LPGASP+++AS +  P
Sbjct: 7    FIHRPVATTLLTLAIALAGMLGFRLLPVAPLPQVDFPVIVISASLPGASPEIMASSVATP 66

Query: 67   LERQLGQIPSLTAMTSTSSYGVSQVSLQFDLNRDIDGATQDVQAAINAAAGILPKNLPYP 126
            LER LG+I  ++ MTSTSS G +++ L FD +RDI+GA +DVQAAINAA  +LP  +P  
Sbjct: 67   LERSLGRIAGVSEMTSTSSLGSTRIILVFDFDRDINGAARDVQAAINAAQSLLPTGMPSR 126

Query: 127  PVYAKVNPADAPVMTLALTSTTVSLRTMSDLADTLMAQRLAQISGVGRVSVLGGLKPAVR 186
            P Y KVNP+DAP+M + LTS T +   + D A T +AQ+L+QI GVG V+V G   PAVR
Sbjct: 127  PTYRKVNPSDAPIMIMTLTSDTYNPGQLYDYASTQLAQKLSQIEGVGDVTVGGSSLPAVR 186

Query: 187  VQADLARLAAYGISMEDLRTAIANANVSGPKGSLDGAQQAYTIAANDQIAAADAYRPIIV 246
            V  +   L   G+S++ +RTAI+NAN   P+G+LD  QQ + +  ND +  A  Y+P++V
Sbjct: 187  VALNPQALFNQGVSLDAVRTAISNANQRRPQGALDDGQQRWQLRTNDALQTAREYQPLVV 246

Query: 247  AYRNGSPVTIGDVAQIVDGLENERTGAWYQGTPAVILDIQRQPGANVIDVVKGIRAEIPR 306
             Y NG+ V + DVA + D +++ R     +G PAV+L I++ P ANVID V  IRAE+P 
Sbjct: 247  HYNNGAAVRLSDVATVEDSVQDVRNAGMSRGKPAVLLLIRKTPEANVIDTVDRIRAEMPL 306

Query: 307  IQRLVPAGVKLTVVSDRTETIRASVHDVQFTLLLSVVLVTLVVLLFLRSMRATIIAGVAL 366
            +  ++PA + L +  DR+ TIRAS+H+V+ +L+++V LV LVV +FLRS RAT+I  VA+
Sbjct: 307  LHEVIPAAIDLEIAQDRSPTIRASLHEVEQSLIIAVALVILVVFVFLRSGRATLIPAVAV 366

Query: 367  PLSLITSFGVMYFMGFSLDNLSLMALTIGTGFVVDDAIVMIENIVRHMEDGESPMQAALK 426
            P+SLI +F  MY  GFSL+NLSLMALTI TGFVVDDAIV++ENI RH+E G  P+ AALK
Sbjct: 367  PVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENIARHVEAGMKPLAAALK 426

Query: 427  GASEIGFTVISLTMSLIAVFIPLLFMSGLVGRMFREFALTLTIAVVTSAIVSLTLTPMMC 486
            G  E+GFTV+S+++SLIAVF+PLL + GL+GR F EF++TL+++++ S  +S+TLTP+MC
Sbjct: 427  GVREVGFTVLSMSLSLIAVFLPLLMIGGLIGRFFSEFSITLSVSILISLFISVTLTPVMC 486

Query: 487  SRLLK-HA-RDERQVPGLATITAWIDRGAEAYHRSLLWVLKHQRATLVVTFLTIAATLVL 544
            + LLK HA R + +  G+  +   I +G   Y RSL  VL H R  L++ F TIA T  L
Sbjct: 487  AYLLKPHAPRSQPRQRGVGRLLMAIQQG---YGRSLNVVLNHARWVLLLFFATIALTGWL 543

Query: 545  YAIAPKGFLPLQDTASITAVTEAGPAVSFAEMKARQTETAQAIEADPDVVGVVSVIGAGS 604
            +   PK F+P QDT  ++    A  ++SF  M+++  +  + + ADP V  VV   G   
Sbjct: 544  FVHIPKTFMPEQDTGRLSGFISADQSISFQAMRSKLQDFMEIVGADPAVDSVVGFTGGMR 603

Query: 605  VNPTPNVGRLVLTLKPRGDRKSDVGEVIERLKQRVAGIPGMTVYFQAVQDVQISTQASRS 664
             N     G + ++LKP  +RK    E+I RL+ ++A  PG  +Y  AVQD++   + S +
Sbjct: 604  TNS----GSMFISLKPLSERKESALEIIARLRTKLAKEPGANLYLNAVQDLRAGGRESNA 659

Query: 665  QYQYTLTATDAALLSQWANRLLAELRRDPLFRDVSTEAQEGGLRAALDVNRERAGQLGVS 724
             YQY+L + D   L  W  ++       P   DV+++ Q+ G   AL  +RE   +LG+ 
Sbjct: 660  AYQYSLLSDDLGALRTWEPKIREAFSALPQLADVNSDQQDKGSEMALTYDRESMARLGID 719

Query: 725  VQAINDTLNDAFAQRQISTIYGQANQYRVVLEAMPVYQQDPSILSKLYVPGNAGAQVPIS 784
            V   N  LN+AF QRQISTIY   NQY+VV+E  P Y QD S LS+++V  + G  +P+S
Sbjct: 720  VSQANALLNNAFGQRQISTIYQPLNQYKVVMEVDPRYTQDISALSQMFVINSDGKAIPLS 779

Query: 785  AVAELKRTIAPLAISHQAQFPSVAMSFNLAPDASLGEALKRIETIEKQIGMPGSIVGVFY 844
              A  +   APL+++H+    +  +SFNL    SL +A + IE     IG+P S+ G F 
Sbjct: 780  WFAHWQPANAPLSVNHEGLSAASTISFNLPEGVSLSQASEAIERTMTAIGVPSSVRGSFA 839

Query: 845  GDAAEFSKALAGQPWLILAAIVAIYIVLGVLYESYIHPITILSTLPSAGVGAILALMLFG 904
            G A  F ++ + Q WL+LAAI A+YIVLG+LYESY+HP+TILSTLPSAGVGA+LAL LF 
Sbjct: 840  GTAQVFQQSQSSQLWLMLAAIAAVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFD 899

Query: 905  QDLSVIGLIGIILLMGIVKKNAIMMIDFALEAERGQGMSSYEAIVQACRLRFRPIMMTTL 964
               S+I LIGI+LL+GIVKKNAIMM+DFALEAER   +S+ EAI QAC LRFRPIMMTTL
Sbjct: 900  TPFSLIALIGILLLIGIVKKNAIMMVDFALEAERNGQLSAREAIFQACLLRFRPIMMTTL 959

Query: 965  AALFGALPLAVESGTGSELRFPLGISIIGGLLLSQLLTLYTTPVIYLALDRINRK 1019
            AALFGALPL + SG G+ELR PLGI+I GGL++SQLLTLYTTPV+YL +D++ RK
Sbjct: 960  AALFGALPLVLSSGDGAELRQPLGITIAGGLVMSQLLTLYTTPVVYLMMDKLRRK 1014



 Score = 39.3 bits (90), Expect = 1e-06
 Identities = 35/143 (24%), Positives = 71/143 (49%), Gaps = 8/143 (5%)

Query: 368  LSLITSFGVMYFMGFSLDN-----LSLMALTIGTGFVVDDAIVMIENIVRHMEDGESPMQ 422
            LS + S GV   +   L +     ++L+ + +  G V  +AI+M++  +    +G+   +
Sbjct: 881  LSTLPSAGVGALLALELFDTPFSLIALIGILLLIGIVKKNAIMMVDFALEAERNGQLSAR 940

Query: 423  AALKGASEIGFTVISLTMSLIAVF--IPLLFMSGLVGRMFREFALTLTIAVVTSAIVSLT 480
             A+  A  + F  I +T +L A+F  +PL+  SG    + +   +T+   +V S +++L 
Sbjct: 941  EAIFQACLLRFRPIMMT-TLAALFGALPLVLSSGDGAELRQPLGITIAGGLVMSQLLTLY 999

Query: 481  LTPMMCSRLLKHARDERQVPGLA 503
             TP++   + K  R +R +   A
Sbjct: 1000 TTPVVYLMMDKLRRKKRPLTAAA 1022