Pairwise Alignments

Query, 401 a.a., ABC transporter permease subunit from Rhodopseudomonas palustris CGA009

Subject, 398 a.a., Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine (NCBI) from Rhodospirillum rubrum S1H

 Score =  400 bits (1028), Expect = e-116
 Identities = 207/365 (56%), Positives = 266/365 (72%)

Query: 27  KGLLAQVLFVAALFWIGYEIVDNARDNLANQRIASGFAFMSHTAGFGVSQTLIPYQESDS 86
           + +  QVL +AAL W  + I DN   N+  + I +GFAF+ H+AGFG+  +LIPY E+ S
Sbjct: 25  RAIAFQVLTIAALVWFFWAIFDNTLTNMRTRGITTGFAFLDHSAGFGILMSLIPYDETYS 84

Query: 87  YTRVFLVGLINTLVVSVVGIFFATVIGFAVALARLSPNWLISRIGGGYVEIVRNLPLLFQ 146
           Y R F+VGL+NTL+VS +G+  AT+IGF V +ARLS NWLI+++   YVE +RN+PLL Q
Sbjct: 85  YGRTFVVGLLNTLLVSGLGVIAATLIGFVVGVARLSRNWLIAKLALIYVETLRNIPLLLQ 144

Query: 147 ILFWYLAVLGSLPSPRQSVSVMDSFFLSNRGIVVPRLAGEAGLDGFLVALLIAVAAAIVL 206
           I FWY AVL  LP PRQS+ +   FFL+NRG  +P      G+    +AL++A+A A+ +
Sbjct: 145 IFFWYFAVLRPLPQPRQSLELGALFFLNNRGFYMPSPIAGDGMALVGLALVVALALALAI 204

Query: 207 PLYARRRLFATGKPMRVWPWVLGLLIGLPLIAFVIVGKPFSLEVPVLRGFNFVGGSRIAP 266
             +A RR  ATG     W   L L++GLPL+AF+ +G P + +VP L+GFNFVGGSR+ P
Sbjct: 205 GRWATRRRMATGLGFPSWRTGLALVLGLPLLAFLALGTPVTFDVPHLQGFNFVGGSRLIP 264

Query: 267 EFVALTLALSTYTAAFIAEVVRAGILSVHKGQMEAGASLGLSRGQTLRLIVIPQAMRVIL 326
           E VAL LALS YTAAFIAE+VR+GIL+V  GQ EA  SLGL    TLRLIV+PQA+RV++
Sbjct: 265 EMVALLLALSMYTAAFIAEIVRSGILAVSHGQTEAAHSLGLKPTATLRLIVLPQALRVMI 324

Query: 327 PPLTNQYLNLTKNSSLAVAIGYPDLFSVFAGTTLSQTGQAIEVIAITMGVYLLISLVTSA 386
           PP T+QYLNL KNSSLA AIGYPDL SVF GTTL+QTGQA+E++ +TM VYLLISLV S 
Sbjct: 325 PPTTSQYLNLIKNSSLATAIGYPDLVSVFMGTTLNQTGQAVEIVGMTMAVYLLISLVVSG 384

Query: 387 LMSLY 391
           LM+ Y
Sbjct: 385 LMNWY 389