Pairwise Alignments

Query, 641 a.a., sigma 54-interacting transcriptional regulator from Rhodopseudomonas palustris CGA009

Subject, 489 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

 Score =  276 bits (706), Expect = 2e-78
 Identities = 158/340 (46%), Positives = 212/340 (62%), Gaps = 27/340 (7%)

Query: 319 RGIIGQSEAIQTTLRQVKLVAPTAATVLITGESGTGKELIARAIHEASTRRDRPLIRVNC 378
           R ++G S A+Q   + ++ VA T A+VLI GESGTGKE++AR +H  S RR  P + VNC
Sbjct: 144 RSLVGTSRAVQHVRQMMEQVADTEASVLILGESGTGKEVVARNLHYHSKRRQGPFVPVNC 203

Query: 379 AAIPRELFESEFFGHARGAFTGAVRDRIGRFELADGGTLFLDEVGEIPLELQSKLLRVLQ 438
            AIP EL ESE FGH +GAFTGA+  R GRFELA+GGTLFLDE+G++PL +Q KLLRVLQ
Sbjct: 204 GAIPAELLESELFGHEKGAFTGAITARSGRFELAEGGTLFLDEIGDMPLPMQVKLLRVLQ 263

Query: 439 EGNFERVGEERTRNVDVRLIAATNRDLKREVQRGHFREDLYFRLSVFPIESVPLRDRRED 498
           E  FERVG  RT+N DVR+IAAT++DL++ ++ G FREDLY+RL+VFPIE  PLR+R ED
Sbjct: 264 ERTFERVGSNRTQNADVRIIAATHKDLEKMIEEGTFREDLYYRLNVFPIEMAPLRERVED 323

Query: 499 IPLLAQHFLTNEARELKTELRLSQGDVRRLMRYDWPGNVRELQNVIERATILAQNGRLR- 557
           IPLL    ++    E +  +R +   +  L R+DWPGNVREL N++ER  I+   G +  
Sbjct: 324 IPLLMNELISRMEHEKRGSIRFNSAAIMSLCRHDWPGNVRELANLVERMAIMHPYGVIGV 383

Query: 558 LDLPE-----SAGSHASATSGRQKPDAR-----PVVMTVAD-------------LRNLER 594
           ++LP+            ATS   + + R     P+V+  A              L NLE+
Sbjct: 384 MELPKKFRHVDDDDEQYATSLHDEMEERAAISAPMVVPEAQAMLPVEGLDLKEYLGNLEQ 443

Query: 595 DNIIAALRACKGKVFGDDGAAAMLDMKPTTLASRIKALGI 634
             I  AL    G V     AA  L ++ TTL  +++  G+
Sbjct: 444 GLIHQALEDAGGVV---ARAAERLRIRRTTLVEKMRKYGM 480