Pairwise Alignments

Query, 641 a.a., sigma 54-interacting transcriptional regulator from Rhodopseudomonas palustris CGA009

Subject, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  263 bits (673), Expect = 1e-74
 Identities = 148/338 (43%), Positives = 209/338 (61%), Gaps = 11/338 (3%)

Query: 297 LRERLQLENDYLQEEIRIETNPRGIIGQSEAIQTTLRQVKLVAPTAATVLITGESGTGKE 356
           +R+  +L+ND   +      N +G IG S+ +Q   R +   A + A++ ITGESGTGKE
Sbjct: 112 IRKASKLKNDVDNKN----QNYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKE 167

Query: 357 LIARAIHEASTRRDRPLIRVNCAAIPRELFESEFFGHARGAFTGAVRDRIGRFELADGGT 416
           + A AIH AS R D+P I +NCAAIP++L ESE FGH +GAFTGA  +R G  E ADGGT
Sbjct: 168 VCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGT 227

Query: 417 LFLDEVGEIPLELQSKLLRVLQEGNFERVGEERTRNVDVRLIAATNRDLKREVQRGHFRE 476
           LFLDE+ E+ L+LQ+KLLR +Q G F++VG  + ++VDVR + ATNRD  +EVQ G FRE
Sbjct: 228 LFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFRE 287

Query: 477 DLYFRLSVFPIESVPLRDRREDIPLLAQHFLTNEAREL-KTELRLSQGDVRRLMRYDWPG 535
           DLY+RL V P+   PLR R +D+  +A   L   ++E  K  +RLS   V R  +Y+WPG
Sbjct: 288 DLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPG 347

Query: 536 NVRELQNVIERATILAQNGRLRLDLPESAGSHASATSGRQKPDARPVVMTVADLRNL--- 592
           NVR+LQNV+    +L +   + LD+     +  SA   R  P A    ++V ++  L   
Sbjct: 348 NVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHEIFPLWMT 407

Query: 593 ERDNIIAALRACKGKVFGDDGAAAMLDMKPTTLASRIK 630
           E+  I  A+ AC G +     AA  LD+ P+T+  +++
Sbjct: 408 EKQAIEQAIEACDGNI---PRAATYLDVSPSTIYRKLQ 442