Pairwise Alignments

Query, 641 a.a., sigma 54-interacting transcriptional regulator from Rhodopseudomonas palustris CGA009

Subject, 477 a.a., two component, sigma54 specific, transcriptional regulator, Fis family from Marinobacter adhaerens HP15

 Score =  272 bits (695), Expect = 3e-77
 Identities = 154/342 (45%), Positives = 212/342 (61%), Gaps = 23/342 (6%)

Query: 319 RGIIGQSEAIQTTLRQVKLVAPTAATVLITGESGTGKELIARAIHEASTRRDRPLIRVNC 378
           R ++G S  +Q   + ++ VA    +VLITGESGTGKE++AR +H  S+RRD+P + VNC
Sbjct: 137 RSLVGTSRKVQQVRQLMEQVADKDVSVLITGESGTGKEVVARNLHYHSSRRDKPFVPVNC 196

Query: 379 AAIPRELFESEFFGHARGAFTGAVRDRIGRFELADGGTLFLDEVGEIPLELQSKLLRVLQ 438
            AIP EL ESE FGH +GAFTGA+  R+GRFE+A+GGTLFLDE+G++PL +Q K+LRVLQ
Sbjct: 197 GAIPAELLESELFGHEKGAFTGAITARVGRFEMAEGGTLFLDEIGDMPLNMQVKILRVLQ 256

Query: 439 EGNFERVGEERTRNVDVRLIAATNRDLKREVQRGHFREDLYFRLSVFPIESVPLRDRRED 498
           E  FERVG  RT++ DVR+IAAT++ L+  ++ G FREDLY+RL+VFPIE   LRDR ED
Sbjct: 257 ERTFERVGSNRTQSADVRVIAATHKHLEDMIESGDFREDLYYRLNVFPIEMPALRDRVED 316

Query: 499 IPLLAQHFLTNEARELKTELRLSQGDVRRLMRYDWPGNVRELQNVIERATILAQNGRLRL 558
           IPLL    ++   +E +  LR++   +  L R+DWPGNVREL N++ER +I+   G + +
Sbjct: 317 IPLLINELISRMEKEKRGSLRMNSAAIMSLCRHDWPGNVRELANLVERLSIMHPYGVIGV 376

Query: 559 -DLP---------------ESAG--SHASATSGRQKPDARPV--VMTVADLRNLERDNII 598
            +LP               E  G  S      G   P   PV  +     L NLE+  I 
Sbjct: 377 QELPKKFRYVDDYDENRPVEDTGMPSGIPGLVGLDAPALLPVNGIDLKDYLSNLEKQLIQ 436

Query: 599 AALRACKGKVFGDDGAAAMLDMKPTTLASRIKALGITSPRAQ 640
            AL    G V     AA  L ++ TTL  +++  G+    ++
Sbjct: 437 QALDEAGGVV---ARAAEKLRIRRTTLVEKVRKYGLREEESE 475