Pairwise Alignments

Query, 641 a.a., sigma 54-interacting transcriptional regulator from Rhodopseudomonas palustris CGA009

Subject, 638 a.a., two component, sigma54 specific, transcriptional regulator, Fis family from Marinobacter adhaerens HP15

 Score =  651 bits (1679), Expect = 0.0
 Identities = 359/630 (56%), Positives = 438/630 (69%), Gaps = 9/630 (1%)

Query: 10  TATIDAP-LRAAVFDSAVEAVLLVDPTLDQIVDANNAASALLGHDRDTLLQTRFSALHGA 68
           T  I+AP L     D   EA LLVD   D I+ AN+A   ++G DR +L+ T  + L   
Sbjct: 3   TEAINAPELTGNWIDHLPEAALLVDAGRDLILSANSAMGRMIGSDRQSLVGTPCTHLFTD 62

Query: 69  QLPALVVFTQAVFAKGTYWTHALTPLHADGTQLRLEYAGKLLPYRGRSLLLLTMSDLEQR 128
           Q P L+ FT+    +   W+      H DG  + LE +   +       +LL + D  Q 
Sbjct: 63  QRPQLIAFTEETLFRSHGWSRDFFLQHRDGHTVELEISSSRVGEAETQNVLLLLRDRRQL 122

Query: 129 RRRYVDAVADDYMRDGLPAWQRVERVFQDIERENQLILRAAGEGIYGVNAEGKTTFVNPA 188
           R       A+ Y R GL  W+RVE +F+D+ERENQLIL A GEGIYGV+AEG+ TF NPA
Sbjct: 123 RTLRERHDANHYHRGGLLEWRRVEELFKDMERENQLILHAVGEGIYGVDAEGRGTFANPA 182

Query: 189 AERMLGWSAEELVGKEMHAMVHHSHHDGRHYPGQQCPIYAAFRDGAVHTVDGEVFWHKDG 248
           AERMLGW  +EL+G+ +H +VHHSH DG  YP + CPIYAAFRD +V  V  + FW KDG
Sbjct: 183 AERMLGWRIDELMGRVLHRVVHHSHADGSLYPLKDCPIYAAFRDASVKRVGEDWFWRKDG 242

Query: 249 TPVWVEYTSTPIHDRSGGVVGAVVVFRDVNQRHEADEKLHAALAEVDRLRERLQLENDYL 308
           +   VEYTSTPI D +G  VGAVVVFRD++ R EA ++L  AL EV+ L+ RL++EN YL
Sbjct: 243 SGFPVEYTSTPILD-NGHPVGAVVVFRDISARQEAQKELQKALEEVETLKHRLEMENAYL 301

Query: 309 QEEIRIETNPRGIIGQSEAIQTTLRQVKLVAPTAATVLITGESGTGKELIARAIHEASTR 368
           QEE+  E +   I GQSEAI+  +R++ +VAPT A VLITGESGTGKELIARAIH++S+R
Sbjct: 302 QEELSAEYHFHEIFGQSEAIKAIVRRIGMVAPTDANVLITGESGTGKELIARAIHQSSSR 361

Query: 369 RDRPLIRVNCAAIPRELFESEFFGHARGAFTGAVRDRIGRFELADGGTLFLDEVGEIPLE 428
           RDRPLIRVNCAAIP++LFESEFFGH +GAFTGAV DR+GRFELADGGTLFLDEVGEIPLE
Sbjct: 362 RDRPLIRVNCAAIPKDLFESEFFGHIKGAFTGAVSDRVGRFELADGGTLFLDEVGEIPLE 421

Query: 429 LQSKLLRVLQEGNFERVGEERTRNVDVRLIAATNRDLKREVQRGHFREDLYFRLSVFPIE 488
           LQ KLLRVLQ+  FERVGE  TR VDVR+IAATNRDLK EVQ   FREDLYFRL+VFPIE
Sbjct: 422 LQGKLLRVLQDQQFERVGENNTRAVDVRVIAATNRDLKSEVQEKTFREDLYFRLNVFPIE 481

Query: 489 SVPLRDRREDIPLLAQHFLTNEAREL-KTELRLSQGDVRRLMRYDWPGNVRELQNVIERA 547
           SVPLR R EDIP+LAQ FL    ++  + +L L + DV  L  Y WPGNVREL+NVIER 
Sbjct: 482 SVPLRRRLEDIPILAQEFLNRACQKFNRPQLALKERDVETLKAYHWPGNVRELENVIER- 540

Query: 548 TILAQNGRLRLDLPESAGSHASATSGRQKPDARPV---VMTVADLRNLERDNIIAALRAC 604
            ++  +GRL LDLP      A+ T+  +   AR     +MT  +LR LE+ N+  AL   
Sbjct: 541 QVITSDGRLDLDLP--GPESAARTTPAEVAPARHYSGDLMTEQELRELEKQNLTRALTMS 598

Query: 605 KGKVFGDDGAAAMLDMKPTTLASRIKALGI 634
            G+VFGDDGAAAML +KPTTL SR+K L I
Sbjct: 599 SGRVFGDDGAAAMLGIKPTTLTSRLKKLKI 628