Pairwise Alignments
Query, 559 a.a., PAS domain-containing methyl-accepting chemotaxis protein from Rhodopseudomonas palustris CGA009
Subject, 426 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056
Score = 251 bits (641), Expect = 4e-71
Identities = 141/403 (34%), Positives = 234/403 (58%), Gaps = 6/403 (1%)
Query: 146 AVIEFNMDGTIRTANENFLKTIGYTLDEIKGEHHNMFVEPADRDSAAYREFWAALNRGEY 205
A IEF+ G + +AN FL +GY L+E+ G+HH +F PA+ S Y++FW +L +G+
Sbjct: 28 ASIEFDTSGNVISANPLFLNAVGYRLEELTGKHHRIFCSPAECQSQQYQQFWTSLAQGKS 87
Query: 206 QAAEYKRIGKGGREIWLQASYNPIFDDKGRPAKVVKFATDVTEQKLRNADMAGQIAAIGK 265
+ + R K G + L+A+Y PI D G+ + V+K A+DVTEQ L + A+ +
Sbjct: 88 HSGTFMRYKKDGSLLVLEATYFPIKTD-GKVSSVMKIASDVTEQYLHAESQRDLLTALNQ 146
Query: 266 SQAVIEFDMDGTVLTANDNFLRALGYSLAEIKGQPHSMFVDPSERAGAAYREFWASLNRG 325
+ AVIEF+ DGT+++AN FL+ +GYSL +IKG+ H +F + + FW SL G
Sbjct: 147 NFAVIEFEPDGTIISANSAFLKTMGYSLDQIKGKHHRLFC--FDEFYQQHPTFWKSLAAG 204
Query: 326 EYQAAEYKRIGKGGREVYIQASYNPILDLNGRPFKVVKFATDVTKQVLARIGNERVRGMM 385
+ + + R G +V+IQASY+P+ D N + +K+VKFA+D+T +VL ++V
Sbjct: 205 QAYSGRFLRKNSYGSQVWIQASYSPVKDQNNKVYKIVKFASDITAEVLRE---QQVTDAA 261
Query: 386 ETVAAGAEELNTSVREISSTMAKSRETAAGAVDRVSNADAQAQRLTSAAQSMSGIVELIN 445
+ + E + + + + S A V + + Q ++L ++ +S IV+ I+
Sbjct: 262 NIAYSTSVETSQVAQGGNHVLQDSVRLAEKMVGNIEQSLQQIEQLVVLSKDVSEIVKTIS 321
Query: 446 NITGQINLLALNATIESARAGEAGRGFAVVAAEVKNLANQAKQATDKIGEEISSLNSISG 505
I Q NLLALNA IE+ARAGE GRGFAVVA EV+ LA++ +AT++I + ++ S++
Sbjct: 322 GIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSKATEEINQVVNKNLSLTE 381
Query: 506 DVAMALNAIKQAINEVSEYVTSTAAAVEEQSTVTSEMSSSMQR 548
V +++ + Q NE + + + +E+ +SS++ +
Sbjct: 382 AVTSSISQVSQIANETNGRIVEVSTIMEQIYQGAENVSSAVSQ 424
Score = 105 bits (261), Expect = 5e-27
Identities = 88/293 (30%), Positives = 137/293 (46%), Gaps = 19/293 (6%)
Query: 138 VAAANRSQAVIEFNMDGTIRTANENFLKTIGYTLDEIKGEHHNMFVEPADRDSAAYREFW 197
+ A N++ AVIEF DGTI +AN FLKT+GY+LD+IKG+HH +F D + FW
Sbjct: 141 LTALNQNFAVIEFEPDGTIISANSAFLKTMGYSLDQIKGKHHRLFC--FDEFYQQHPTFW 198
Query: 198 AALNRGEYQAAEYKRIGKGGREIWLQASYNPIFDDKGRPAKVVKFATDVTEQKLRNADM- 256
+L G+ + + R G ++W+QASY+P+ D + K+VKFA+D+T + LR +
Sbjct: 199 KSLAAGQAYSGRFLRKNSYGSQVWIQASYSPVKDQNNKVYKIVKFASDITAEVLREQQVT 258
Query: 257 -AGQIAAIGKSQAVIEFDMDGTVLTANDNFLRALGYSLAEIKGQPHSMFV---DPSE--- 309
A IA + VL + + ++ + Q + V D SE
Sbjct: 259 DAANIAYSTSVETSQVAQGGNHVLQDSVRLAEKMVGNIEQSLQQIEQLVVLSKDVSEIVK 318
Query: 310 -RAGAAYREFWASLNRGEYQAAEYKRIGKGGREVYIQASYNPILDLNGRPFKVVKFATDV 368
+G A + +LN A E R G+ GR + A + + L R K + V
Sbjct: 319 TISGIADQTNLLALN----AAIEAARAGEQGRGFAVVA--DEVRQLASRTSKATEEINQV 372
Query: 369 TKQVLARIGNERVRGMMETVAAGAEELNTSVREISSTMAKSRETAAGAVDRVS 421
+ L+ E V + V+ A E N + E+S+ M + + A VS
Sbjct: 373 VNKNLSL--TEAVTSSISQVSQIANETNGRIVEVSTIMEQIYQGAENVSSAVS 423
Score = 86.3 bits (212), Expect = 2e-21
Identities = 82/329 (24%), Positives = 147/329 (44%), Gaps = 41/329 (12%)
Query: 260 IAAIGKSQAVIEFDMDGTVLTANDNFLRALGYSLAEIKGQPHSMFVDPSERAGAAYREFW 319
+ ++ + A IEFD G V++AN FL A+GY L E+ G+ H +F P+E Y++FW
Sbjct: 20 VQSLSEHIASIEFDTSGNVISANPLFLNAVGYRLEELTGKHHRIFCSPAECQSQQYQQFW 79
Query: 320 ASLNRGEYQAAEYKRIGKGGREVYIQASYNPILDLNGRPFKVVKFATDVTKQVL-ARIGN 378
SL +G+ + + R K G + ++A+Y PI +G+ V+K A+DVT+Q L A
Sbjct: 80 TSLAQGKSHSGTFMRYKKDGSLLVLEATYFPI-KTDGKVSSVMKIASDVTEQYLHAESQR 138
Query: 379 ERVRGMMETVAAGAEELNTSVREISS----TMAKSRETAAGAVDRVSNADAQAQ------ 428
+ + + + A E + ++ +S TM S + G R+ D Q
Sbjct: 139 DLLTALNQNFAVIEFEPDGTIISANSAFLKTMGYSLDQIKGKHHRLFCFDEFYQQHPTFW 198
Query: 429 RLTSAAQSMSG-------------------IVELINNITGQINLLALNATIESARAGEAG 469
+ +A Q+ SG V+ NN +I A + T E R +
Sbjct: 199 KSLAAGQAYSGRFLRKNSYGSQVWIQASYSPVKDQNNKVYKIVKFASDITAEVLREQQVT 258
Query: 470 RGFAVVAAEVKNLANQAKQATDKIGEEISSLNSISGDVAMALNAIKQAI---NEVSEYVT 526
+ + + A+ + + + + G++ +L I+Q + +VSE +
Sbjct: 259 DAANIAYSTSVETSQVAQGGNHVLQDSVRLAEKMVGNIEQSLQQIEQLVVLSKDVSE-IV 317
Query: 527 STAAAVEEQSTVTSEMSSSMQRAAVEAAR 555
T + + +Q+ + + AA+EAAR
Sbjct: 318 KTISGIADQTNLLA------LNAAIEAAR 340