Pairwise Alignments

Query, 1040 a.a., CusA/CzcA family heavy metal efflux RND transporter from Rhodopseudomonas palustris CGA009

Subject, 1066 a.a., CzcA family heavy metal efflux protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  563 bits (1452), Expect = e-164
 Identities = 364/1073 (33%), Positives = 586/1073 (54%), Gaps = 53/1073 (4%)

Query: 3    RLVELAVNRRFLMLALFLLVLAGGVAAFEHLNIEAYPDPTPPMVDIVTQSPGLSAEEIER 62
            +L+E AV  R ++L   +  +A        LN++A+PD T   V + T + GL+AEE+E+
Sbjct: 4    KLIEQAVRSRLIVLIFLIGAMAAAAVMLPKLNLDAFPDVTNVQVQVNTAAEGLAAEEVEK 63

Query: 63   YITIPIETQVAGIKNLKTIRTISLYGLSDVKLQFSFDYTYQQALQQVLNRLSQL-PPLPG 121
             I+ P+E+ +  + ++  +R++S  GLS V + F        A QQV  +L      +P 
Sbjct: 64   LISYPVESAMYALPSVTEVRSLSRTGLSIVTVVFEEGTDIYFARQQVFEQLQAAREAIPD 123

Query: 122  NVQ-PGISP-LSPIGEIFRYRLVGPP--GYSVLDLKTLQDWVLQRRFRAIPGVIDVTGWG 177
             V  P I P  S +G++++Y L   P  G +  +L++L D++++     + GV DV  +G
Sbjct: 124  GVGVPEIGPNTSGLGQVYQYILRAAPESGIAPDELRSLNDYLVKLIMMPVGGVTDVLSFG 183

Query: 178  GKTKTYEVQVDFNKLIAYGLTLPQVLQAVSNSNINVGGNTVDIGAQSAVVRGVGLIRS-- 235
            G+ + Y+VQVD  KL++YGL L  V +A+  +N N GG  +  G +  VVRG GL+ +  
Sbjct: 184  GEVRQYQVQVDPAKLLSYGLKLDDVTRALEGNNRNAGGWFMAKGQEQLVVRGYGLLPAGE 243

Query: 236  --LDDLANTMVVSNNGNPVLVKDVAKVSVAEKPRLGIAGINNDDD---------IVQGIV 284
              LD +A   +    G PV + DVA+V+   + R+G   +   D+         +V G++
Sbjct: 244  AGLDAIAQIPLTEWQGTPVRIMDVAQVAFGSEIRVGAVTMTRRDEAGSPQVLGEVVAGVI 303

Query: 285  LMRRGEQSSPTIARVEQAVTKINASGVLPPGVRIERIYDRKDLIDTTTHTVLHNMVVGIL 344
            L R G  +  TI  +      I  +  LP GV  E  YD+ DL+     TV   +++  +
Sbjct: 304  LKRMGANTKATIDDINSRTALIQQA--LPDGVTFEVFYDQSDLVTKAVTTVRDALLLAFM 361

Query: 345  LIVLLQWIFLGDLRSALIVGATIPFALFFAVIILVLRGESANLLSVG--AIDFGLIVDAT 402
             IV +  +FL ++R+  +V  +IP ++  A++++   G SANL+S+G  A+  G++VD +
Sbjct: 362  FIVAVLALFLVNVRATALVLLSIPVSIALALMVMSYFGMSANLMSLGGLAVAIGMLVDGS 421

Query: 403  VIMVEAIFRRLSHTTVLSPEERSQISADTIMGMKKH-------------AIRSAAADVSR 449
            V+MVE IFR L+      PE R      T  G+ +               I  AA +V  
Sbjct: 422  VVMVENIFRHLTQ-----PEGRVDNGLPTDPGLSEEDAHREGGYGGIAMRILQAAREVCS 476

Query: 450  SIFFAAAIIIAAFLPLFTLSGVEGNIFGPMARTYAYALAGGLLATFTVTPALSAIILPHH 509
             IFFA  III  F PLF L GVEG +F PMA +   A+   L+    V PAL+  +    
Sbjct: 477  PIFFATLIIIVVFAPLFALEGVEGKLFQPMAVSIILAMLSALMVALVVVPALAVYLFRRG 536

Query: 510  VQETETWLMRMLHKVYTPWLGWAVKNRPVVMAGAAGLVL--TTVIATRFLGLEFLPKLEE 567
            V   ++ L+  + K Y   LG AV  RP  + G   LVL   ++     LG EF+P+LEE
Sbjct: 537  VHLRQSPLLTPIDKGYRRVLG-AVMARPKTV-GITALVLFGLSMALLPRLGTEFVPELEE 594

Query: 568  GNLWIRATLPPTISLTEGNGYVNDMRKLIAGFPEVESVVSQHGRPDDGTDAAGFFNAEFF 627
            G + +R TL PT SL         +  ++  FPEV+  +S+ G P+ G D     N E +
Sbjct: 595  GTINLRVTLAPTASLDTSLMVAPKLEAMLMEFPEVDYALSRIGAPELGGDPEPVSNIEIY 654

Query: 628  APLKPASQWPGSHDKDELTARMLKQLQAKFPGVEFNFSQYLQDNVSEAVSGVKGENSIKL 687
              LKP  +W  +  + EL  R++++  + FPG+ F FSQ +   V E +SGVK + +IKL
Sbjct: 655  IGLKPIDEWQSAASRAELQ-RLMEEKLSVFPGLLFTFSQPIATRVDELLSGVKAQLAIKL 713

Query: 688  YGNDLQALTDTANKIKAVLSTVQGVQDLAVFTSLGQPTIQIDVNRARAARYGLTPGDINA 747
            +G DL  L +   ++  ++S V G  D+++    G+  + +  +RAR ARYG++  ++  
Sbjct: 714  FGPDLDVLAEKGQQLSELVSKVPGAVDVSLEQVSGEAQLVVRPDRARLARYGISVDEVMN 773

Query: 748  TIKVAIGGDSAGDLYEPGSDRHFPIIVRLAPEYRKSAEAIHNLRIGVQGPNGITQIPLSE 807
             +   IGG  AG + +   +  + I VRL  + R SA+AI +L +   G NG  ++ L E
Sbjct: 774  LVSTGIGGSDAGQVID--GNARYDINVRLKADTRASADAIADLLL--VGANG-ARVRLGE 828

Query: 808  LADIQLVSGAAYIYREDQERYLPIKFSVRERDLGSAIREAQEKVNAQVQLPPGSRMEWVG 867
            +AD+ +      I R+D +R + ++ +V  RD+GS +++    V  +  LPPG  +   G
Sbjct: 829  VADVVVEMAPPNIRRDDVQRRVVVQANVSGRDMGSVVKDIYALV-PEADLPPGYTVSVGG 887

Query: 868  EFGNLQDAIKRLSIVVPISLALIGALLFFNFGSLTDTLLAMSVIPMAIFGGVMGLLVSGI 927
            ++ N Q A  RL +VVP+S+ LI  LL+F+FG+L    L M+ +P+A+ GGV+ L VSG 
Sbjct: 888  QYENQQRAQARLMLVVPVSIGLIALLLYFSFGALKQVGLIMANVPLALIGGVVALYVSGT 947

Query: 928  PFSVSAAIGFIALFGIAVMDGIIILSQYNQLIDQGLDRLRAVVRTGELQLRPVLMTCVIA 987
              SV ++IGFI LFG+AV++G++++   NQ    G    +AV      +LRPVLMT + +
Sbjct: 948  YLSVPSSIGFITLFGVAVLNGVVLVDSINQRRAGGEGLYQAVYEGTAARLRPVLMTALTS 1007

Query: 988  GVGLLPAAMSTGIGSQVQKPLAIVVVTGMMLAPGVILITLPVLISYFSRRRAN 1040
             +GL+P  +S+G+GS++Q+PLA+V++ G+  +  + L+ LP L  Y +  R N
Sbjct: 1008 ALGLIPILLSSGVGSEIQQPLAVVIIGGLFSSTALTLLVLPTL--YMALYRQN 1058



 Score = 60.5 bits (145), Expect = 6e-13
 Identities = 98/394 (24%), Positives = 160/394 (40%), Gaps = 41/394 (10%)

Query: 130  LSPIGEIFRYRLVGPPGYSVLDLKTLQDWVLQRRFRAIPGVIDVT--GWGGKTKTYEVQV 187
            LS +      +L GP     LD+   +   L      +PG +DV+     G+ +   V+ 
Sbjct: 702  LSGVKAQLAIKLFGPD----LDVLAEKGQQLSELVSKVPGAVDVSLEQVSGEAQLV-VRP 756

Query: 188  DFNKLIAYGLTLPQVLQAVSNS-NINVGGNTVDIGAQSAV-VRGVGLIR-SLDDLANTMV 244
            D  +L  YG+++ +V+  VS     +  G  +D  A+  + VR     R S D +A+ ++
Sbjct: 757  DRARLARYGISVDEVMNLVSTGIGGSDAGQVIDGNARYDINVRLKADTRASADAIADLLL 816

Query: 245  VSNNGNPVLVKDVAKVSVAEKPRLGIAGINNDDDIVQGIVLMRRGEQSSPTIARVEQAVT 304
            V  NG  V + +VA V V   P      I  DD  VQ  V+++    S   +  V + + 
Sbjct: 817  VGANGARVRLGEVADVVVEMAP----PNIRRDD--VQRRVVVQ-ANVSGRDMGSVVKDIY 869

Query: 305  KINASGVLPPG--VRIERIYDRKDLIDTTTHTVLHNMVVGILLIVLLQWIFLGDLRSALI 362
             +     LPPG  V +   Y+ +         V+    V I LI LL +   G L+   +
Sbjct: 870  ALVPEADLPPGYTVSVGGQYENQQRAQARLMLVVP---VSIGLIALLLYFSFGALKQVGL 926

Query: 363  VGATIPFALFFAVIILVLRGESANL-LSVGAID-FGLIVDATVIMVEAIFRRLSHTTVLS 420
            + A +P AL   V+ L + G   ++  S+G I  FG+ V   V++V++I +R +    L 
Sbjct: 927  IMANVPLALIGGVVALYVSGTYLSVPSSIGFITLFGVAVLNGVVLVDSINQRRAGGEGLY 986

Query: 421  PEERSQISADTIMGMKKHAIRSAAADVSRSIFFAAAIIIAAFLPLFTLSGVEGNIFGPMA 480
                              A+    A   R +   A       +P+   SGV   I  P+A
Sbjct: 987  -----------------QAVYEGTAARLRPVLMTALTSALGLIPILLSSGVGSEIQQPLA 1029

Query: 481  RTYAYALAGGLLATFTVTPALSAIILPHHVQETE 514
                  L      T  V P L   +   + +E E
Sbjct: 1030 VVIIGGLFSSTALTLLVLPTLYMALYRQNDRELE 1063