Pairwise Alignments

Query, 394 a.a., ABC transporter substrate-binding protein from Rhodopseudomonas palustris CGA009

Subject, 414 a.a., ABC-type branched-chain amino acid transport systems, periplasmic component from Pseudomonas stutzeri RCH2

 Score =  151 bits (382), Expect = 3e-41
 Identities = 115/386 (29%), Positives = 188/386 (48%), Gaps = 30/386 (7%)

Query: 3   VGLTIPLTGVFSGDGGDLKLGYELAIAQINAGSDIAQKWGLKGKGVLGRQIRHKVSDTEG 62
           +GL  P TG +  +G     G  +AI +IN              GVLGR ++    +T  
Sbjct: 25  LGLNYPRTGSYKEEGLAQMRGALMAIDEINQAG-----------GVLGRPLQLISRNTAS 73

Query: 63  KPNLDVQSATQFIQRDKAIMVSGSVSSSSAIALEELGSREKVLYMVGIAGSNDITGKNCQ 122
           +P+  + +  +      A M+ G VSS+ AIA  +      +LY   +  SND TGK+  
Sbjct: 74  RPDKAIANVDKMADEGVA-MLFGGVSSAVAIAASKRAKERGLLYFGTLTYSNDTTGKDGH 132

Query: 123 RYGFRSQQNAYMAAKGLAPVVAKALGKNIK---MAFLVPDYTYGHSVYDSFSKFA--TEQ 177
           RY FR   NA+M+A+    V+ + L +N+      ++  DYT+GH+   S  +     +Q
Sbjct: 133 RYMFRECNNAWMSAR----VLGQYLNENMPGKTYFYITSDYTWGHTSESSLRQATGTVDQ 188

Query: 178 GWKQVAKEVVP-LGTTDYSSALLNIANSGADVFVNIAFGADSVASTKQAEQFGVLKRMKL 236
              Q  K   P    +DY +AL   +NSGA+V V + FG D V + + A++ G+ K+M++
Sbjct: 189 NRHQGVKTAFPGARLSDYRAALEKASNSGAEVLVLVLFGEDMVRAMRIADELGLNKKMQI 248

Query: 237 VVPNLSSFQDKELGAELMQGVYGSCDFWFGLQ--DKFPLAKAFVDSFVAQNNYHPRWGAH 294
            +PNL+    +  G ++M+GV G+  + + +   +     KAFV +F  +   HP   A 
Sbjct: 249 AIPNLTLSMVELAGPDIMRGVLGTEPWTWRVPELEGSERGKAFVRNFGDRYQTHPSSSAA 308

Query: 295 IGYMQTYLWAMSVERANTFNPVDVIKVMENSKAQPYVTTIGNVYFRAEDHQMVRPIPILR 354
             Y   Y WA +  RA +     VI  +EN     Y    G   +R  DHQ V+ +  +R
Sbjct: 309 SAYSIVYQWADAATRAKSIGSEQVISALEN---HSYSLLKGQQQWRGFDHQNVQTVYAVR 365

Query: 355 GKKPSEM---KHKEDFYDIIDLVDGE 377
            K   E+   + K+D+++I+  + GE
Sbjct: 366 VKPREEVLKDRFKQDYFEIVHRLSGE 391