Pairwise Alignments

Query, 394 a.a., ABC transporter substrate-binding protein from Rhodopseudomonas palustris CGA009

Subject, 412 a.a., ABC-type branched-chain amino acid transport systems, periplasmic component from Pseudomonas stutzeri RCH2

 Score =  135 bits (339), Expect = 3e-36
 Identities = 110/387 (28%), Positives = 188/387 (48%), Gaps = 30/387 (7%)

Query: 3   VGLTIPLTGVFSGDGGDLKLGYELAIAQINAGSDIAQKWGLKGKGVLGRQIRHKVSDTEG 62
           +GL  P TG +  +G +L  G  LA+ +IN              G+LGRQ++    ++  
Sbjct: 26  IGLNYPSTGNYKSEGLELSRGALLAVDEINGRG-----------GLLGRQLQLVSLNSAA 74

Query: 63  KPNLDVQSATQFIQRDKAIMVSGSVSSSSAIALEELGSREKVLYMVGIAGSNDITGKNCQ 122
           +P     +  +F  +  A MV G  +S  A+A  +      +LY   +  +N+ITG++  
Sbjct: 75  RPEKAQANIERFANQGAA-MVFGGANSEEALAAGQRARELGLLYFPTLGYANEITGRDGH 133

Query: 123 RYGFRSQQNAYMAAKGLAPVVAKALGKNIKMAFLVPDYTYGHSVYDSF-----SKFATEQ 177
           R+ FR   +A+M+A+ L   ++  +  N +  ++  D  +G S+  +      S+     
Sbjct: 134 RHLFRESNSAWMSARVLGEYLSWHM-PNRRYHYVSLDDAWGRSMEQALREATKSRDRARH 192

Query: 178 GWKQVAKEVVPLGTTDYSSALLNIANSGADVFVNIAFGADSVASTKQAEQFGVLKRMKLV 237
           G+ ++A+     G  DY +AL   A S ADV V +  G D V + + A    + KRM+++
Sbjct: 193 GYSKIAERGARRG--DYLAALQKAAASNADVLVIVLLGEDLVQTMRLAHTLELGKRMQII 250

Query: 238 VPNLSSFQDKELGAELMQGVYGSCDFWFGLQDKF---PLAKAFVDSFVAQNNYHPRWGAH 294
           VPNL+    ++ G  +M+ V G+ + W     K       +AF D F+AQ+  +P   A 
Sbjct: 251 VPNLTQSIVEQAGPLVMEHVIGT-EAWTWRVPKLVGSTEGQAFADRFIAQHQAYPGSTAA 309

Query: 295 IGYMQTYLWAMSVERANTFNPVDVIKVMENSKAQPYVTTIGNVYFRAEDHQMVRPIPILR 354
             Y     WA + +RA + +   VI  +EN +   Y       Y+R  DHQ V+ I  +R
Sbjct: 310 SAYGIVRQWADAAQRAGSIDAEAVIAAVENHR---YQLLKDEQYWRDFDHQNVQSIYAVR 366

Query: 355 GKKPSEM---KHKEDFYDIIDLVDGEA 378
            +  SE+   + K+D++ II  +DGEA
Sbjct: 367 VRNRSEIMQDRFKQDYFTIIHRMDGEA 393