Pairwise Alignments

Query, 335 a.a., ABC transporter substrate-binding protein from Rhodopseudomonas palustris CGA009

Subject, 367 a.a., periplasmic binding ABC transporter protein from Sinorhizobium meliloti 1021

 Score =  140 bits (353), Expect = 5e-38
 Identities = 109/354 (30%), Positives = 161/354 (45%), Gaps = 27/354 (7%)

Query: 2   RLVRLMTA-LCALSAFASLQPA--------KAADVICYNCPPQWADWATMLKQVKADLGY 52
           RL+ L TA L A +A A  +P+        K   +     P  W  +  ++   KA  G 
Sbjct: 7   RLLSLSTAMLLATTAAAVAEPSEELIAAAKKEGTLTTIALPHNWCGYGDVIAGFKAKYGI 66

Query: 53  DIPFDNKN--SGQALSQLIAEKSNP---VADIGYFGVNFGMKAKAQGVTQPYKPAKWDEV 107
           ++   N +  SG  +  + A K N      D+   G++FG  AKA+G+ QPYK + WD +
Sbjct: 67  EVNELNPDAGSGDEIEAIKANKGNTGPQAPDVIDVGLSFGPSAKAEGLIQPYKVSTWDTI 126

Query: 108 PAGLKDPDGEWTAIHSGTLGLFVNVDALGGKPVPACWRDLEKPDYKGMVGYLDPPSAAVG 167
           P   KDP+G W   + G L   VN D +  K VP  W DL+K DY   V     P A+  
Sbjct: 127 PDTAKDPEGYWYGDYYGVLSFVVNTDIV--KDVPKDWADLKKSDYANSVALAGDPRASNQ 184

Query: 168 YVGAV-AVNLALGGSD--QDFSPAVLFFKKLHDNDAIVPKQTSYARVVSGEIPILFDYDF 224
            V AV A  LA G +D  +     + FF +++     VP     A +  G  PI+  +D+
Sbjct: 185 AVQAVYAAGLAAGETDAAKAGEAGLAFFAEVNKAGNFVPVIGKSASLAQGSTPIIIAWDY 244

Query: 225 NAYRAKYTEKGN--FAFVIPCEGSVVFPYVVSLTKGAPNADKAKKVMDYLLSDKGQAIWT 282
           N    + +  GN     V+P  G V   YV +++  AP+ + AK  M+YL SD+GQ  W 
Sbjct: 245 NGLSWRDSLNGNPPVEVVVPASGVVAGVYVQAISAFAPHPNAAKLWMEYLYSDEGQLGWL 304

Query: 283 NAYLRPARPIAL------PPEVKAKFLPDSDYARAKNVDWAKMEAAQKAFTDRY 330
             Y  P R   L      P E+  K  P   Y +A      +    ++A T ++
Sbjct: 305 KGYCHPIRFNDLVKNGKVPKEMLDKLPPAESYEKAVFPTLDEQAKGKEAITTKW 358