Pairwise Alignments

Query, 517 a.a., ABC transporter substrate-binding protein from Rhodopseudomonas palustris CGA009

Subject, 538 a.a., peptide-binding periplasmic ABC transporter protein from Sinorhizobium meliloti 1021

 Score =  164 bits (415), Expect = 8e-45
 Identities = 148/500 (29%), Positives = 230/500 (46%), Gaps = 38/500 (7%)

Query: 19  LLGGAAATGVLGLPRQALAAKTGGILKVAAPANPSSLDPATGGAGSDHSILWTIYDTLVE 78
           LL G     ++G P  A   K GG + V    + S+LDPA G    + S++ +++D L++
Sbjct: 5   LLAGVCTAALMGNPALADDIKQGGEMTVTYKDDVSTLDPAIGYDWQNWSMIKSLFDGLMD 64

Query: 79  WDYDTLKPKPGLAKWSYP---DPNTMVLDISEGIKFHDGTSLDAEAVKFNLDR--NRSDQ 133
           +   T + +P LA+ SY    D       + +G+KFH+G  L A+ VK++++R  N + Q
Sbjct: 65  YVPGTTELRPDLAE-SYEISEDGKIFTFKLRKGVKFHNGRELTAQDVKYSIERVVNPATQ 123

Query: 134 R------SNVK--PDLSSVDSVEVTG-----PLQVTLKLKNPDTALPAILSDRAGMMVSP 180
                  + +K   + S+    E++G     P  +  +L  PD     +++     +V  
Sbjct: 124 SPGAGFFATIKGVEEASAGKGGELSGITVQDPHTIRFELTRPDATFLHVMALNFAHVVPK 183

Query: 181 TNIKALGNDTDRKPVGAGPWKFVRWNDNEIVVVARNENYWRKGRPFLDGIEFNIIPENAT 240
             ++  G D  + PVG+G +K   W   + +V  R  +YW +G P LD I F +  E   
Sbjct: 184 EEVEKHGADFGKNPVGSGAFKLAEWTLGQRLVFERFTDYWNEGLPKLDRITFEVGQEPVV 243

Query: 241 ALRSVVAGQNDMAFQ--LPARLKPVIE--RAKDLKLVSSPTLYCIQVYFNYARAPLDNIK 296
           AL  +  G+ D+      PA+   V      KDL ++    L+   V  N   AP D ++
Sbjct: 244 ALLRLQNGEIDVPGDGIPPAKFVEVTNDPNFKDL-IIRGGQLHTGYVTMNVKMAPFDKVE 302

Query: 297 VRQAINFALDRDTFVKAALSGLGEPARMTLPSSHWAYAKDVAGTYPYDPEKAKKLLAEAG 356
           VR+A+N A+++D  ++  ++G    A   LP S   YAKD AG Y YDPE AKKLL +AG
Sbjct: 303 VRKAVNMAINKDRILR-IINGRAVAANQPLPPSMPGYAKDYAG-YAYDPEGAKKLLEQAG 360

Query: 357 YKDGLEMTIGGYTDQDSVRRGEVIQDQLGKVGIKLKFTRGTIAEISAQFFAQEKKFDMLV 416
             DG    +         R  + IQ  L  +GI         A + A    +E +  M+ 
Sbjct: 361 LGDGFSTELYVMNTDPQPRIAQAIQQDLKAIGITASIKSLAQANVIAA-GGEENQAPMIW 419

Query: 417 S---AWTGR-PDPSMTY----GLGFDKGAYYNAGRTADPELSKLIQESRASQD---LNER 465
           S   AW    PDPS  Y    G G      +N     + EL K   E+ A  D     ER
Sbjct: 420 SGGMAWIADFPDPSNFYGPILGCGGAVPGGWNWSWYCNEELDKKAAEADAIADPAKAAER 479

Query: 466 AAVFAKIQRFTVEQALSAPL 485
            A++  I    +E A  AP+
Sbjct: 480 EALWRDIYLKIMEDAPWAPI 499