Pairwise Alignments

Query, 333 a.a., HupU protein from Rhodopseudomonas palustris CGA009

Subject, 361 a.a., Ni-Fe hydrogenase, small subunit (NCBI) from Rhodospirillum rubrum S1H

 Score = 80.9 bits (198), Expect = 5e-20
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 25/277 (9%)

Query: 6   ILWLQGASCGGCTMAALDGGHSGWFAELKRFGIDLLWHPSVSEATAEEAVAIFERIASGE 65
           ++WL G  C  C+ + +   H    +++    + L +  ++  A   +A AI        
Sbjct: 54  VIWLHGLECTCCSESFIRSAHP-LVSDVVLSMLSLDYDDTLMAAAGHQAEAILAETRETY 112

Query: 66  QKLGALVLEGAVLRGPNGSGRFNMLGGTGRSMLHWVTALAPRADYVVAAGSCAAFGGVPM 125
           +    L +EG     P  +  F  + G GR  +  +  +A  +  V+A GSCA++G V  
Sbjct: 113 RGRYILAVEG---NAPLANDGFFCMPG-GRPFVDTLKEMAADSAAVIAWGSCASWGCVQA 168

Query: 126 AGGNPTDASGLQYAAAEPGGVLGTAFRSRAGLPVINIAGCAPHPGWISETLAALALGGVD 185
           A  NPT A  +                   G P+I + GC P    ++  ++ L L    
Sbjct: 169 AKPNPTGAVPIDQVI--------------TGKPLIKVPGCPPIAEVMTGVISYL-LTFDR 213

Query: 186 TAALDAFGRPRFFADHLAHHGCARNEYYE----FKASAEELSQQGCLMEHLGCKATQAVG 241
              LD  GRP+ F     H  C R  +++     +A  ++ +++G  +  +GCK      
Sbjct: 214 FPELDLQGRPKMFYSQRIHDKCYRRGHFDAGQFVEAFDDDAARRGHCLYKMGCKGPTTYN 273

Query: 242 DCNQRGWN-GSGSCTSGGYACIACTSPGFESSQGFME 277
            C+  GWN G+      G+ C+ C+  GF     F E
Sbjct: 274 ACSTTGWNEGTSFPIQSGHGCLGCSEDGFWDKGPFYE 310