Pairwise Alignments

Query, 333 a.a., HupU protein from Rhodopseudomonas palustris CGA009

Subject, 317 a.a., periplasmic [NiFe] hydrogenase, small subunit, isozyme 1 (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  102 bits (254), Expect = 1e-26
 Identities = 79/269 (29%), Positives = 119/269 (44%), Gaps = 25/269 (9%)

Query: 6   ILWLQGASCGGCTMAALDGGHSGWFAELKRFGIDLLWHPSVSEATAEEAVAIFERIASGE 65
           +++L  A C GC+ + L      +  EL    I L +H ++  A  + A A   +  +  
Sbjct: 59  VVYLHNAECTGCSESVLRA-FQPYLDELILDTISLDYHETIMAAAGDAAEAALHQAVANP 117

Query: 66  QKLGALVLEGAVLRGPNGS-GRFNMLGGTGRSMLHWVTALAPRADYVVAAGSCAAFGGVP 124
                +V EGA+    NG  G+         +ML   + + P+A  V+A G+CA FGGV 
Sbjct: 118 DGFICIV-EGAIPTADNGIYGKV-----ANHTMLSICSDIVPKAKAVIAYGTCATFGGVQ 171

Query: 125 MAGGNPTDASGLQYAAAEPGGVLGTAFRSRAGLPVINIAGCAPHPGWISETLAALALGGV 184
            A  NPT A GL  A                G+  IN+AGC P+P  +  TL    L   
Sbjct: 172 AAKPNPTGAKGLNDAL------------KHLGVNAINLAGCPPNPYNLVGTL-VYYLKNN 218

Query: 185 DTAALDAFGRPRFFADHLAHHGCARNEYY---EFKASAE-ELSQQGCLMEHLGCKATQAV 240
               +D F RP  F     H  C R +++   EF  S E E +++G  +  LGCK    +
Sbjct: 219 AAPEMDEFNRPLMFFGQSVHDNCPRLKHFDAGEFAPSFESEEARKGWCLYELGCKGPSTM 278

Query: 241 GDCNQRGWNGSGSCTSGGYACIACTSPGF 269
            +C +  +N +      G+ CI C+ P F
Sbjct: 279 NNCPKIKFNQTNWPVEAGHPCIGCSEPDF 307