Pairwise Alignments

Query, 333 a.a., HupU protein from Rhodopseudomonas palustris CGA009

Subject, 378 a.a., hydrogenase (NiFe) small subunit HydA (RefSeq) from Shewanella sp. ANA-3

 Score = 93.2 bits (230), Expect = 9e-24
 Identities = 75/273 (27%), Positives = 113/273 (41%), Gaps = 24/273 (8%)

Query: 2   DSFDILWLQGASCGGCTMAALDGGHSGWFAELKRFGIDLLWHPSVSEATAEEAVAIFERI 61
           D   ++WL  A C GC+ + +          L    I L +H ++  A   +A    E  
Sbjct: 72  DRVPLIWLHMAECTGCSESLVRADTPN-LDSLIFDHISLEYHETLMAAAGWQAEENLEHA 130

Query: 62  ASGEQKLGALVLEGAVLRGPNGSGRFNMLGGTGRSMLHWVTALAPRADYVVAAGSCAAFG 121
               +    L +EGAV    NGS  F  +G  G + L  +   A  A  +++ G+CA+FG
Sbjct: 131 LETYKGRYLLAVEGAVPTANNGS--FLTVGCKGHTGLEIIKHAAEDAAAIISVGTCASFG 188

Query: 122 GVPMAGGNPTDASGLQYAAAEPGGVLGTAFRSRAGLPVINIAGCAPHPGWISETLAALAL 181
           GV  A  NPT A G+    ++               PVIN+ GC P    I  TL    +
Sbjct: 189 GVQAAYPNPTGAKGVHEVVSK---------------PVINLGGCPPSEKNIVGTLMYFIM 233

Query: 182 GGVDTAALDAFGRPRFFADHLAHHGCARNEYYEFKASAEEL----SQQGCLMEHLGCKAT 237
            G    ALD F RP++      H  C R   ++     EE     +++G  +  +GCK  
Sbjct: 234 FG-KLPALDMFNRPKWAYGARVHDNCERRGRFDAGEFVEEFGDHGAKEGYCLYKVGCKGP 292

Query: 238 QAVGDCNQRGWNGSGSC-TSGGYACIACTSPGF 269
               +C    +N   S     G+ C+ C+ P F
Sbjct: 293 YTYNNCPTERFNHHTSWPVLAGHGCMGCSEPNF 325