Pairwise Alignments

Query, 339 a.a., flagellar motor protein MotA from Rhodopseudomonas palustris CGA009

Subject, 393 a.a., hypothetical protein from Phaeobacter inhibens DSM 17395

 Score =  186 bits (471), Expect = 1e-51
 Identities = 119/315 (37%), Positives = 176/315 (55%), Gaps = 32/315 (10%)

Query: 17  KLSSPRIFLVRMLVFLVLCALIVVVLYKQILAAFMANPGLNGLICAVLVIGIVLAFRQVI 76
           + S P   ++ ML+ L L      V   ++L  F ANP LNG I  V V G++  F QV+
Sbjct: 11  QFSQPVRQIIMMLIALGLSGFGAFVALPRVLPVFEANPWLNGFIGLVFVFGVMACFWQVL 70

Query: 77  RLYPEVAWVNNFRINDPGLALD--RRPSLLAPMAAMLGGERSGRIAISPQTMRHLLDSIA 134
           +L   V W+  F     G+A +  R PS+LAP+A++L   R  R+ +   + R +LDS+A
Sbjct: 71  QLIGSVRWIEAFAA---GVAREDVRPPSMLAPLASLLRS-RGARMQLGSSSTRSILDSVA 126

Query: 135 TRLDEARDISRYMTGLLVFLGLLGTFWGLIETVGSIGGVIGSLKVT-GDAG-SLFDTLKE 192
           TR+DE R+I+RY+  LL+FLGLLGTF+GL  TV ++   I SL    G+ G ++F+ L  
Sbjct: 127 TRIDEEREITRYIVNLLIFLGLLGTFYGLATTVPAVVDTIRSLAPQEGEEGIAVFNRLMT 186

Query: 193 GLAAPLGGMGISFSSSLFGLAGSLVLGFLDLQSSQAQNRFYTDLEDWLASTVRGSVDDGA 252
           GL A LGGMG++F+SSL GLAGSL++G L+L +   QNRFY +LE+WL+S  R S   G 
Sbjct: 187 GLEAQLGGMGVAFASSLLGLAGSLIVGLLELFAGHGQNRFYRELEEWLSSFTRVSFSSGE 246

Query: 253 LAGSADLQAALERLRLTLEDGGANRATTAAMANLANAIQSLVGHMRNEQQMIREWADAQG 312
             G                 GG N A       LA  + S+   M   Q M  + ++ + 
Sbjct: 247 ETG-----------------GGENSA-------LAGVLDSMTEQMDALQAMFVQSSEGRA 282

Query: 313 EQNREIKELLSALVN 327
             ++++  L+ A+ +
Sbjct: 283 GVDQKLSALVDAITD 297