Pairwise Alignments

Query, 338 a.a., site-specific tyrosine recombinase XerD from Rhodopseudomonas palustris CGA009

Subject, 298 a.a., tyrosine recombinase XerD from Pseudomonas stutzeri RCH2

 Score =  199 bits (505), Expect = 1e-55
 Identities = 136/307 (44%), Positives = 174/307 (56%), Gaps = 14/307 (4%)

Query: 30  DAGLTELFLDMIAAEQGASANTLDAYRRDLADLSHFLSRRRLSIGSADTAALRSYLADLD 89
           D  + + +LD +  E+G + N+ +AYR DLA  + +LS R + +  A    +  +LA   
Sbjct: 5   DDSVIDRYLDALWLEKGLADNSREAYRSDLALFNGWLSERGVRLAVAGREIILDHLAWRL 64

Query: 90  NRGFATSSVARRLSALRHLFRFLLSERIRADDPAAILAGPKRGRSLPKVLSIADVDQLLA 149
           N G+   S AR LS LR  +R+LL E   A DP   +  P+ GR LPK LS ADV+ LLA
Sbjct: 65  NNGYKARSTARFLSGLRGFYRYLLREGEIAVDPTLRVDLPRLGRPLPKALSEADVEALLA 124

Query: 150 CARQEIDAAEG-GARLRAARLNCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGKGD 208
                 D  +  G R RA     +LEVLYA GLRV+EL+SL L        ++   GKG+
Sbjct: 125 AP----DLGDPIGLRDRA-----MLEVLYACGLRVTELISLTLEQVSMRQGVLRTFGKGN 175

Query: 209 KERLVPLNAGAKQAMARYLEEMAAAKAPKDGPAPKWLFPSFGESGYLTRQHFARDLKDLA 268
           KERLVPL   A   + RY  E         G A   LFPS      +TRQ F   +K  A
Sbjct: 176 KERLVPLGDEALHWLERYQRE--GRDELLGGKARDVLFPSL-RGDQMTRQTFWHRIKLHA 232

Query: 269 ARAGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEERLKSLV 328
             AG+A   +SPH LRHAFA+HLL++GADLR VQ LLGHSD+STTQIYTH+   RL+ L 
Sbjct: 233 KVAGIATS-ISPHTLRHAFATHLLNHGADLRTVQMLLGHSDLSTTQIYTHIARARLQELH 291

Query: 329 RDLHPLG 335
              HP G
Sbjct: 292 AQHHPRG 298