Pairwise Alignments

Query, 338 a.a., site-specific tyrosine recombinase XerD from Rhodopseudomonas palustris CGA009

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score =  216 bits (551), Expect = 4e-61
 Identities = 130/304 (42%), Positives = 181/304 (59%), Gaps = 11/304 (3%)

Query: 30  DAGLTELFLDMIAAEQGASANTLDAYRRDLADLSHFLSRRRLSIGSADTAALRSYLADLD 89
           D GL E FLD +  E+G + NT+ +YR DL+ L  ++++ +  +     A L+ Y + L 
Sbjct: 8   DQGLVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLS 67

Query: 90  NRGFATSSVARRLSALRHLFRFLLSERIRADDPAAILAGPKRGRSLPKVLSIADVDQLLA 149
            + +  +S AR LSA+R LF++L  E++RADDP+A+L  PK    LPK LS A V+ LL+
Sbjct: 68  EQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLS 127

Query: 150 CARQEIDAAEGGARLRAARLNCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGKGDK 209
               +             R   +LE+LYATGLRV+ELVSL +        ++ V GKG K
Sbjct: 128 APDPQSPLE--------LRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGK 179

Query: 210 ERLVPLNAGAKQAMARYLEEMAAAKAPKDGPAPKWLFPSFGESGYLTRQHFARDLKDLAA 269
           ERLVP+   A + +  +L++  +    +       +FPS      +TRQ F   +K  A 
Sbjct: 180 ERLVPMGENAIEWIETFLQQGRSLLLGEQ--TSDIVFPS-SRGQQMTRQTFWHRIKHYAV 236

Query: 270 RAGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEERLKSLVR 329
            AG+    +SPHVLRHAFA+HLL+ GADLR+VQ LLGHSD+STTQIYTHV  ERLK L  
Sbjct: 237 IAGIDVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHN 296

Query: 330 DLHP 333
           + HP
Sbjct: 297 EHHP 300