Pairwise Alignments

Query, 338 a.a., site-specific tyrosine recombinase XerD from Rhodopseudomonas palustris CGA009

Subject, 311 a.a., site-specific tyrosine recombinase XerD from Sinorhizobium meliloti 1021

 Score =  314 bits (804), Expect = 2e-90
 Identities = 174/307 (56%), Positives = 215/307 (70%), Gaps = 8/307 (2%)

Query: 31  AGLTELFLDMIAAEQGASANTLDAYRRDLADLSHFLSRRRLSIGSADTAALRSYLADLDN 90
           A   E FL+M++AE+GA+ANTL +Y RDL D   FL  R   +  A    LRSYL+ L  
Sbjct: 6   AAYVEAFLEMMSAERGAAANTLQSYERDLEDARSFLRSRGTGLTDASADDLRSYLSHLAG 65

Query: 91  RGFATSSVARRLSALRHLFRFLLSERIRADDPAAILAGPKRGRSLPKVLSIADVDQLLAC 150
           +GF  SS ARRLSALR  ++FL +E +R DDP  IL  PK+ R+LPK LSI DV +L+  
Sbjct: 66  QGFKASSQARRLSALRQFYKFLYAEGLRTDDPTGILDAPKKARTLPKTLSIEDVTRLIGQ 125

Query: 151 ARQEIDAAEGGARLRAA-RLNCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGKGDK 209
           A  E +A  G   + A  R++ L+E+LYATG+RVSELVSLP S   ++ R +++RGKG+K
Sbjct: 126 A--EAEAKSGSDDVMAKLRMHALIELLYATGMRVSELVSLPASVLAQNGRFLIIRGKGNK 183

Query: 210 ERLVPLNAGAKQAMARYLEEMAAAKAPKDGPAPKWLFPSFGESGYLTRQHFARDLKDLAA 269
           ERLVPL+  A +AM  Y E +    A  D P   WLFPS G+SG+L RQ FARDLK LAA
Sbjct: 184 ERLVPLSQAAIRAMRAYGEALQEESA--DSP---WLFPSNGKSGHLPRQVFARDLKSLAA 238

Query: 270 RAGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEERLKSLVR 329
           RAG+    +SPHVLRHAFASHLL NGADLR VQ LLGHSDISTTQIYTHV+EERL  LV+
Sbjct: 239 RAGIRVAAISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEERLHDLVQ 298

Query: 330 DLHPLGE 336
           + HPL +
Sbjct: 299 NHHPLAK 305