Pairwise Alignments

Query, 338 a.a., site-specific tyrosine recombinase XerD from Rhodopseudomonas palustris CGA009

Subject, 321 a.a., integrase/recombinase XerD (RefSeq) from Shewanella amazonensis SB2B

 Score =  217 bits (553), Expect = 3e-61
 Identities = 142/322 (44%), Positives = 188/322 (58%), Gaps = 13/322 (4%)

Query: 14  REPEAQAATLRPASYSDAGLTELFLDMIAAEQGASANTLDAYRRDLADLSHFLSRRRLSI 73
           + PE   A L+P++   A L + FLD + + QG S NTL AYR DL     FL+ + + +
Sbjct: 13  KRPEKSGAPLKPSAAGMA-LIDAFLDELWSLQGLSDNTLSAYRTDLCQFDAFLTAKGIGL 71

Query: 74  GSADTAALRSYLADLDNRGFATSSVARRLSALRHLFRFLLSERIRADDPAAILAGPKRGR 133
            + D+  LR YLA    +G A +S AR LS+LR  +R  L     ++DP A++  PK  +
Sbjct: 72  LALDSLTLRDYLAYRFEQGMAKTSTARMLSSLRRFYRHQLVSGTLSEDPTALIESPKLPK 131

Query: 134 SLPKVLSIADVDQLLACARQEIDAAEGGARLRAARLNCLLEVLYATGLRVSELVSLPLSA 193
           SLP  LS A V+QLLA    + D  E        R   +LE+LYATGLRVSELV L +S 
Sbjct: 132 SLPGSLSEAQVEQLLAEPSSD-DPVE-------CRDKAMLELLYATGLRVSELVGLGMSE 183

Query: 194 ARRDARMIVVRGKGDKERLVPLNAGAKQAMARYLEEMAAAKAPKDGPAPKWLFPSFGESG 253
                 ++ + GKG KERLVP+   A+ A+ ++L         K G A + +FPS     
Sbjct: 184 LGLRQGLVRIIGKGGKERLVPMGEVAQDALEQFLAG-PRQMLLKQG-ATEVVFPS-NRGQ 240

Query: 254 YLTRQHFARDLKDLAARAGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTT 313
            +TRQ F   +K  A RAG++  L SPH LRHAFA+HLL++GADLR+VQ LLGHS +STT
Sbjct: 241 QMTRQTFWHRIKLYALRAGISTEL-SPHTLRHAFATHLLNHGADLRVVQLLLGHSSLSTT 299

Query: 314 QIYTHVVEERLKSLVRDLHPLG 335
           QIYTHV   RL  L    HP G
Sbjct: 300 QIYTHVARTRLADLHEKHHPRG 321