Pairwise Alignments

Query, 338 a.a., site-specific tyrosine recombinase XerD from Rhodopseudomonas palustris CGA009

Subject, 328 a.a., Phage integrase (NCBI) from Rhodospirillum rubrum S1H

 Score =  278 bits (711), Expect = 1e-79
 Identities = 165/311 (53%), Positives = 201/311 (64%), Gaps = 16/311 (5%)

Query: 35  ELFLDMIAAEQGASANTLDAYRRDLADLSHFLSRRRLSIGSADTAALRSYLADLDNRGFA 94
           E FL+M+ AE+GA+  T++AY RDL D + FL  + L   +     LR+YLA +   G A
Sbjct: 23  EAFLEMMLAERGAARRTVEAYGRDLRDYAAFLREKGLDGLTVSRPTLRAYLATMAAAGLA 82

Query: 95  TSSVARRLSALRHLFRFLLSERIRADDPAAILAGPKRGRSLPKVLSIADVDQLLACARQE 154
             S AR+LS LR    FL+SE  R DDP   L  P+ GR LP+VLS A+VD LL      
Sbjct: 83  PRSQARKLSCLRQFHGFLVSEGRRPDDPTIGLDSPRLGRPLPRVLSEAEVDALLV----- 137

Query: 155 IDAAEGGARLRAARLNCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGKGDKERLVP 214
             AAE G   R  R   LLE+LY+TGLRVSELVSLPLS A RD   I+VRGKGDKERLVP
Sbjct: 138 --AAEAGEGARGLRARVLLELLYSTGLRVSELVSLPLSVANRDPETILVRGKGDKERLVP 195

Query: 215 LNAGAKQAMARYLEEMAAAKAPKDGPA----PKWLFPSFGESGYLTRQHFARDLKDLAAR 270
           L   A+ A+  +L        P  G A     ++LFPS    G+LTR  FA+ L +LA R
Sbjct: 196 LGLPARAALRDWLIARPTT-LPASGAARRRADRFLFPSSAAEGHLTRDGFAKMLGELALR 254

Query: 271 AGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEERLKSLVRD 330
           AG+ P  VSPHVLRH FASH+L +GADLR VQTLLGH+DI+TTQIYTHV+++RL +LVR 
Sbjct: 255 AGIDPARVSPHVLRHCFASHMLAHGADLRGVQTLLGHADIATTQIYTHVLDDRLTTLVRT 314

Query: 331 LHPL----GEG 337
            HPL    GEG
Sbjct: 315 AHPLARLKGEG 325