Pairwise Alignments

Query, 338 a.a., site-specific tyrosine recombinase XerD from Rhodopseudomonas palustris CGA009

Subject, 304 a.a., tyrosine recombinase XerD from Dechlorosoma suillum PS

 Score =  175 bits (444), Expect = 1e-48
 Identities = 123/314 (39%), Positives = 164/314 (52%), Gaps = 20/314 (6%)

Query: 29  SDAGLTELFLDMIAAEQGASANTLDAYRRDLADLSHFLSRRRLSIGSADTAALRSYLADL 88
           ++  L E F++ +  + G + NTL AYR DL   + +L   ++ + +A    + +YL  L
Sbjct: 4   ANISLIEEFINTVWLQNGLAQNTLSAYRSDLVQFAKWL---KVPLSAAGEVEISNYLVHL 60

Query: 89  DNRGFAT--SSVARRLSALRHLFRFLLSERIRADDPAAILAGPKRGRSLPKVLSIADVDQ 146
            ++      SS  R +S LR  + +L        +P   +  P  G  LPKVL++A V+ 
Sbjct: 61  YSQPIRPKPSSQRRLISVLRRFYGWLFEGHRIQKNPMLTMELPSLGVRLPKVLAMAQVEA 120

Query: 147 LLACARQEIDAAEGGARLRAARLNCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGK 206
           LL       +A +    L   R   LLEVLYATG RVSELV L L+    D  ++   GK
Sbjct: 121 LL-------EAPDTSTAL-GLRDRALLEVLYATGFRVSELVGLTLTQLNLDMGVVRTIGK 172

Query: 207 GDKERLVPLNAGAKQAMARYLEEMAAAKAPKDGPAPKWLF-----PSFGESGYLTRQHFA 261
           G+KERLVPL   +   + RYL E         G +   LF             +TRQ   
Sbjct: 173 GNKERLVPLGEISSDWLVRYLAESRPVLLK--GRSSDGLFITGHQKKDNNDARMTRQMAW 230

Query: 262 RDLKDLAARAGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVE 321
             +K      G+    +SPHVLRHAFA+HLL+ GADLRIVQ LLGH+DISTTQIYTHV  
Sbjct: 231 LLIKKYGELVGIPRDRISPHVLRHAFATHLLNCGADLRIVQLLLGHADISTTQIYTHVAR 290

Query: 322 ERLKSLVRDLHPLG 335
           ERLK L    HP G
Sbjct: 291 ERLKELHAKHHPRG 304